View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17840_low_3 (Length: 325)
Name: NF17840_low_3
Description: NF17840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17840_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 24 - 274
Target Start/End: Complemental strand, 25604214 - 25603956
Alignment:
| Q |
24 |
actatgaatcaatatgaaaacacactcaattttacaaaacctcacagtctnnnnnnngccccaattaaaggttttaaaccctaatcccccaatgcgagaa |
123 |
Q |
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| T |
25604214 |
actatgaatcaatatgaaaacacactcaattttacaaaacctcacagtctaaaaaaagccccaattaaaggttttaaaccctaatcccccaatgcgagaa |
25604115 |
T |
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| Q |
124 |
gatttgaatatttcaaagtgtcaaagcagg---------gttaaatatggttgaaagttaaaaacagaaatagaccgagtcacaaacttacttttatcta |
214 |
Q |
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| T |
25604114 |
gatttgaatatttcaaagtgtcaaagcagggttaggatagttaaatatggttgaaagttaaaaa-agaaatagaccgagtcacaaacttacttttatcta |
25604016 |
T |
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| Q |
215 |
gctgctttgcatcaagaagcaagttgagattgagagataggctagaaggctgacaacaac |
274 |
Q |
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| T |
25604015 |
gctgctttagatcaaaaattgagttgaaattgagagacatcttagaaggctgataacaac |
25603956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 26 - 272
Target Start/End: Complemental strand, 25886317 - 25886063
Alignment:
| Q |
26 |
tatgaatcaatatgaaaacacactcaattttacaaaacctcacagtctnnnnnnngccccaattaaaggttttaaaccctaatcccccaatgcgagaaga |
125 |
Q |
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| T |
25886317 |
tatgaatcaatatgaaaacacactcaattttacaaaacctcacagtctaaaaaaagccccaattaaaggttttaaaccctaatcccccaatgcgagaaga |
25886218 |
T |
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| Q |
126 |
tttgaatatttcaaagtgtcaaagcagg---------gttaaatatggttgaaagttaaaaacagaaatagaccgagtcacaaacttacttttatctagc |
216 |
Q |
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| T |
25886217 |
tttgaacatttcaaagtgtcaaagcagggttaggatagttaaatatggttgaaagttaaaaa-agaaatagaccgagtcacaaacttacttttacctagc |
25886119 |
T |
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| Q |
217 |
tgctttgcatcaagaagcaagttgagattgagagataggctagaaggctgacaaca |
272 |
Q |
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| T |
25886118 |
tgctttgcatcaaggagtgagttgaaattgagagacatcttagaagactgacaaca |
25886063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 25603337 - 25603279
Alignment:
| Q |
83 |
cccaattaaaggttttaaaccctaatcccccaatgcgagaagatttgaatatttcaaag |
141 |
Q |
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| T |
25603337 |
cccaattaaaggttttaaaccctaatcccccaatccaagaagatttgaatatttcaaag |
25603279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 25884169 - 25884109
Alignment:
| Q |
83 |
cccaattaaaggttttaaaccctaatcccccaatgcgagaagatttgaatatttcaaagtgtca |
146 |
Q |
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| T |
25884169 |
cccaattaaaggttttaaaccctaatcccccaatcc---aagatttgaatatttcaaagcgtca |
25884109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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