View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17840_low_5 (Length: 229)
Name: NF17840_low_5
Description: NF17840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17840_low_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 31699039 - 31699267
Alignment:
| Q |
1 |
gttatgaggtatggtaggaacttattaagtgtggcatggggaatataattagattgcagatgaacggagtctgttgataggtatacagcaatgtaaaaac |
100 |
Q |
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| T |
31699039 |
gttatgaggtagggtaggaacttattaagtgtggcatggggaatataattagattgctgatgaacggagtctgttgataggtatacagcaatgcaaaaac |
31699138 |
T |
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| Q |
101 |
tgaaatcccattaggaaagcggtatggaggagggatgggcaagtagagttagacccttttatactatttgtcgatttatattcaaccaaaccattttggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
31699139 |
tgaaatcccattaggaaagcggtatggaggagggatgggcaagtagagttagacccttttatactatttgtcaatttattttcaaccaaaccattttggt |
31699238 |
T |
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| Q |
201 |
tagatgtgctagtcaatctatggatgatg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
31699239 |
tagatgtgctagtcaatctatggatgatg |
31699267 |
T |
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