View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17841_high_11 (Length: 546)

Name: NF17841_high_11
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17841_high_11
NF17841_high_11
[»] chr7 (13 HSPs)
chr7 (223-523)||(18973681-18973980)
chr7 (216-523)||(7570388-7570697)
chr7 (216-523)||(7576803-7577112)
chr7 (227-344)||(6374706-6374822)
chr7 (434-482)||(6374575-6374623)
chr7 (96-158)||(3200695-3200757)
chr7 (227-364)||(231939-232075)
chr7 (225-260)||(1636700-1636735)
chr7 (225-260)||(5189463-5189498)
chr7 (225-260)||(44672795-44672830)
chr7 (338-372)||(24918379-24918413)
chr7 (338-371)||(2090793-2090826)
chr7 (224-260)||(20436977-20437013)
[»] chr5 (5 HSPs)
chr5 (217-523)||(20473359-20473664)
chr5 (216-523)||(31375665-31375977)
chr5 (225-260)||(22036170-22036205)
chr5 (225-260)||(22039396-22039431)
chr5 (223-260)||(43103661-43103698)
[»] chr3 (13 HSPs)
chr3 (216-523)||(23049022-23049327)
chr3 (217-523)||(17544573-17544879)
chr3 (285-523)||(43683550-43683790)
chr3 (450-523)||(50096724-50096797)
chr3 (290-372)||(46542535-46542616)
chr3 (217-268)||(28716501-28716552)
chr3 (216-302)||(6765023-6765106)
chr3 (225-260)||(10557810-10557845)
chr3 (217-260)||(19194052-19194095)
chr3 (29-71)||(25240725-25240768)
chr3 (217-302)||(6732138-6732220)
chr3 (417-479)||(28716731-28716793)
chr3 (217-302)||(53190035-53190117)
[»] chr2 (9 HSPs)
chr2 (16-217)||(27188649-27188850)
chr2 (16-217)||(27838463-27838664)
chr2 (348-523)||(3252364-3252540)
chr2 (218-260)||(6276923-6276965)
chr2 (223-260)||(16881605-16881642)
chr2 (223-260)||(17039295-17039332)
chr2 (217-260)||(33749731-33749774)
chr2 (225-260)||(35077228-35077263)
chr2 (225-260)||(35080486-35080521)
[»] chr8 (9 HSPs)
chr8 (321-523)||(27805468-27805674)
chr8 (375-523)||(8855839-8855987)
chr8 (375-523)||(8857312-8857460)
chr8 (217-347)||(2847580-2847715)
chr8 (217-325)||(10649566-10649672)
chr8 (289-373)||(31467955-31468038)
chr8 (217-261)||(33383671-33383715)
chr8 (225-260)||(5952438-5952473)
chr8 (227-267)||(8855083-8855123)
[»] chr4 (7 HSPs)
chr4 (386-523)||(34855570-34855707)
chr4 (346-383)||(33493575-33493612)
chr4 (227-319)||(21557366-21557456)
chr4 (216-302)||(14617662-14617745)
chr4 (217-260)||(25186356-25186399)
chr4 (226-260)||(54900089-54900123)
chr4 (217-245)||(12194783-12194811)
[»] scaffold0086 (1 HSPs)
scaffold0086 (217-344)||(24170-24295)
[»] chr1 (8 HSPs)
chr1 (227-344)||(28957245-28957361)
chr1 (456-523)||(8435189-8435256)
chr1 (251-325)||(28411804-28411876)
chr1 (223-260)||(25662856-25662893)
chr1 (217-260)||(21911039-21911082)
chr1 (225-260)||(28138611-28138646)
chr1 (225-260)||(28141861-28141896)
chr1 (223-260)||(14159063-14159100)
[»] chr6 (3 HSPs)
chr6 (431-523)||(11184047-11184139)
chr6 (216-260)||(965071-965115)
chr6 (217-260)||(17733248-17733291)
[»] scaffold0884 (1 HSPs)
scaffold0884 (216-260)||(4288-4332)
[»] scaffold0050 (1 HSPs)
scaffold0050 (287-338)||(38512-38563)
[»] scaffold0012 (1 HSPs)
scaffold0012 (217-260)||(157409-157452)
[»] scaffold0005 (1 HSPs)
scaffold0005 (216-302)||(199632-199715)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-141; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 223 - 523
Target Start/End: Original strand, 18973681 - 18973980
Alignment:
Q  223 aaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaatatttag 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  18973681 aaaattagcaagtgtactaatttatatcgaagtaataatttaattcgtatccacagggactgt--tctaatctctacttagcaatttcattaatatttag 18973778  T
Q  323 gatgtatgtaaatgggggttgcactaggcagttggtttgattgcataaaaagtaaataaatga-tgaagaataaaatcggttttgagatgtgtttagaga 421  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||    
T  18973779 gatgtatgtaaatgggggttgccctaggcagttggtttgattgcataaaaagtaaataaatgactgaagaataaaatcggtttggagatgtgtttaaaga 18973878  T
Q  422 agggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaacaaaatagctc 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  18973879 agggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgctattcagtttacgacaattaacaaaatagctc 18973978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 216 - 523
Target Start/End: Complemental strand, 7570697 - 7570388
Alignment:
Q  216 ctgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaa 315  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||  |||||||||||||||| |||||||||||    
T  7570697 ctgatagaaaattagcaagtgtactaatttatatcgaagtaataatttaattcgtattcacagggactgt--tctaatctctacttagaaatttcattaa 7570600  T
Q  316 tatttaggatgtatgtaaatgggggttgcactaggcagt---tggtttgattgcataaaaagtaaataaatga-tgaagaataaaatcggttttgagatg 411  Q
    ||||||||||||||||||||||||||||| |||||||||   || |||||||||||||||||||||||||||| ||||||||||||| |||||||| ||     
T  7570599 tatttaggatgtatgtaaatgggggttgccctaggcagtagttgatttgattgcataaaaagtaaataaatgactgaagaataaaattggttttgaaata 7570500  T
Q  412 tgtttagagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaac 511  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| |||||| |||||||||||||||||| ||||| |||||||||    
T  7570499 tgtttagagaaaggattaagtctttcgattcatctgtccatcactcatttgtaatctgtatctaactcatatgattgttattcagtttacaacaattaac 7570400  T
Q  512 aaaatagctcag 523  Q
    ||||||||||||    
T  7570399 aaaatagctcag 7570388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 216 - 523
Target Start/End: Complemental strand, 7577112 - 7576803
Alignment:
Q  216 ctgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaa 315  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||  |||||||||||||||| |||||||||||    
T  7577112 ctgatagaaaattagcaagtgtactaatttatatcgaagtaataatttaattcgtattcacagggactgt--tctaatctctacttagaaatttcattaa 7577015  T
Q  316 tatttaggatgtatgtaaatgggggttgcactaggcagt---tggtttgattgcataaaaagtaaataaatga-tgaagaataaaatcggttttgagatg 411  Q
    ||||||||||||||||||||||||||||| |||||||||   || |||||||||||||||||||||||||||| ||||||||||||| |||||||| ||     
T  7577014 tatttaggatgtatgtaaatgggggttgccctaggcagtagttgatttgattgcataaaaagtaaataaatgactgaagaataaaattggttttgaaata 7576915  T
Q  412 tgtttagagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaac 511  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| |||||| |||||||||||||||||| ||||| |||||||||    
T  7576914 tgtttagagaaaggattaagtctttcgattcatctgtccatcactcatttgtaatctgtatctaactcatatgattgttattcagtttacaacaattaac 7576815  T
Q  512 aaaatagctcag 523  Q
    ||||||||||||    
T  7576814 aaaatagctcag 7576803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 227 - 344
Target Start/End: Complemental strand, 6374822 - 6374706
Alignment:
Q  227 ttagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaatatttaggatg 326  Q
    ||||||||| ||||||||||||||||||||||||||||||||  ||||| ||||||  ||||||||||||||||| ||||||||||||||||| | ||||    
T  6374822 ttagcaagtatactaatttatatcgaagtaataatttaattcgtatccaaagggac--tgttctaatctctacttggcaatttcattaatattcaagatg 6374725  T
Q  327 tatgtaaat-gggggttgc 344  Q
    ||||||||| |||||||||    
T  6374724 tatgtaaatagggggttgc 6374706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 482
Target Start/End: Complemental strand, 6374623 - 6374575
Alignment:
Q  434 tttcgattcatctgtccatcgctcattagtaatctgcatctaaatcata 482  Q
    |||||| |||||||||||| |||||||| ||||||||||||||||||||    
T  6374623 tttcgaatcatctgtccattgctcattattaatctgcatctaaatcata 6374575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 3200695 - 3200757
Alignment:
Q  96 catatgaggttaatgtgcttgttgctcttgtcggagagtatggcacaaccaaccaaaaatagc 158  Q
    |||||| |||||||||||||||||||||||||| |||| ||||  ||||| |||| |||||||    
T  3200695 catatggggttaatgtgcttgttgctcttgtcgaagagaatggttcaaccgaccagaaatagc 3200757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 364
Target Start/End: Complemental strand, 232075 - 231939
Alignment:
Q  227 ttagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaatatttaggatg 326  Q
    ||||||||||||||||||||| || ||| ||||||| ||||   ||||||| ||||  |  |||||| ||||||| |||||||||| |||||| |  ||     
T  232075 ttagcaagtgtactaatttatttcaaagcaataattaaatttgtatccacaaggac--tactctaatttctacttggcaatttcatcaatattcaaaata 231978  T
Q  327 tatgtaaatgggggttgcact-aggcagttggtttgatt 364  Q
    ||  ||| |||||| |||||| ||||| |||||||||||    
T  231977 taattaattgggggatgcactaaggcaattggtttgatt 231939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 260
Target Start/End: Original strand, 1636700 - 1636735
Alignment:
Q  225 aattagcaagtgtactaatttatatcgaagtaataa 260  Q
    |||||||||||||||||| |||||||||||||||||    
T  1636700 aattagcaagtgtactaacttatatcgaagtaataa 1636735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 260
Target Start/End: Original strand, 5189463 - 5189498
Alignment:
Q  225 aattagcaagtgtactaatttatatcgaagtaataa 260  Q
    |||||||||||||||||| |||||||||||||||||    
T  5189463 aattagcaagtgtactaacttatatcgaagtaataa 5189498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 260
Target Start/End: Original strand, 44672795 - 44672830
Alignment:
Q  225 aattagcaagtgtactaatttatatcgaagtaataa 260  Q
    |||||||||||||||||| |||||||||||||||||    
T  44672795 aattagcaagtgtactaacttatatcgaagtaataa 44672830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 372
Target Start/End: Complemental strand, 24918413 - 24918379
Alignment:
Q  338 gggttgcactaggcagttggtttgattgcataaaa 372  Q
    ||||||| |||||||||||||||||||||||||||    
T  24918413 gggttgccctaggcagttggtttgattgcataaaa 24918379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 371
Target Start/End: Complemental strand, 2090826 - 2090793
Alignment:
Q  338 gggttgcactaggcagttggtttgattgcataaa 371  Q
    ||||||| ||||||||||||||||||||||||||    
T  2090826 gggttgccctaggcagttggtttgattgcataaa 2090793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 20437013 - 20436977
Alignment:
Q  224 aaattagcaagtgtactaatttatatcgaagtaataa 260  Q
    |||||| |||||||||||| |||||||||||||||||    
T  20437013 aaattaacaagtgtactaacttatatcgaagtaataa 20436977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 217 - 523
Target Start/End: Original strand, 20473359 - 20473664
Alignment:
Q  217 tgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaat 316  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||||||||||||||    
T  20473359 tgatagaaaattagcaagtgcactaatttatatcgaagtaataatttaattcatatccacagggactgt--tctaatctctacttagcaatttcattaat 20473456  T
Q  317 atttaggatgtatgtaaatgggggttgcactaggcagttggtttgattgcataaaaagtaaataaatga-tgaagaataaaatcggttttgagatgtgtt 415  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20473457 atttaggatgtatgtaaatgggggttgccctaggcagttggtttgattgcataaaaagtaaataaatgactgaagaataaaatcggttttgagatgtgtt 20473556  T
Q  416 tagagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaacaaaa 515  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||    
T  20473557 tagagaagggattaagtctttcgattcatccgtccatcgctcattagtaatctacatctaaatcatatgattgctattcagtttacgacaattaacaaaa 20473656  T
Q  516 tagctcag 523  Q
    ||||||||    
T  20473657 tagctcag 20473664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 216 - 523
Target Start/End: Complemental strand, 31375977 - 31375665
Alignment:
Q  216 ctgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcat--- 312  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||  |||||||||||||||||  || ||||||       
T  31375977 ctgatacaaaattagcaagtgtactaatttatatcgaagtaataatttaattcgtatccacaaggac--tgttctaatctctacttgacagtttcatcaa 31375880  T
Q  313 --taatatttaggatgtatgtaaatgggggttgcactaggc-agttgg-tttgattgc-ataaaaagtaaataaatgatgaagaataaaatcggttttga 407  Q
      ||||||| ||||| ||||||||||||||||||  ||||| | |||| |||| |||| || | || ||||||| |||  || |  ||| | ||||||||    
T  31375879 tataatattcaggatatatgtaaatgggggttgccttaggcaaattggttttggttgcaatgataaataaataactga--aaaatgaaacttggttttga 31375782  T
Q  408 gatgtgtttagagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaat 507  Q
     || || | |||||| ||| || |||||| || |||||| | |||| |||||||||||||||||||||||| ||| || ||||||||| ||||||| |||    
T  31375781 aatatgatcagagaaaggactaggtcttttgaatcatctattcatcactcattagtaatctgcatctaaattataagactgttattcagtttacgataat 31375682  T
Q  508 taa-caaaatagctcag 523  Q
    ||| |||||||||||||    
T  31375681 taaccaaaatagctcag 31375665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 260
Target Start/End: Complemental strand, 22036205 - 22036170
Alignment:
Q  225 aattagcaagtgtactaatttatatcgaagtaataa 260  Q
    |||||||||||||||||| |||||||||||||||||    
T  22036205 aattagcaagtgtactaacttatatcgaagtaataa 22036170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 260
Target Start/End: Complemental strand, 22039431 - 22039396
Alignment:
Q  225 aattagcaagtgtactaatttatatcgaagtaataa 260  Q
    |||||||||||||||||| |||||||||||||||||    
T  22039431 aattagcaagtgtactaacttatatcgaagtaataa 22039396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 43103661 - 43103698
Alignment:
Q  223 aaaattagcaagtgtactaatttatatcgaagtaataa 260  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  43103661 aaaattagcaattgtactaacttatatcgaagtaataa 43103698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 216 - 523
Target Start/End: Complemental strand, 23049327 - 23049022
Alignment:
Q  216 ctgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaa 315  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |  ||||||||||||||||||||||||||||    
T  23049327 ctgatacaaaattagcaagtgtactaatttatatcgaagtaataatttaattcgtatccacagggactat--tctaatctctacttagcaatttcattaa 23049230  T
Q  316 tatttaggatgtatgtaaatgggggttgcactaggcagttggtttgattgcataaaaagtaaataaatga-tgaagaataaaatcggttttgagatgtgt 414  Q
    ||||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  23049229 tatttaggatgtatgaaaatgggg-ttgccctagacagttggtttgattgcataaaaagtaaataaattactgaagaataaaatcggttttgagatgtgt 23049131  T
Q  415 ttagagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaacaaa 514  Q
    |||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||    
T  23049130 ttagagaagggaataagtctttcgattaatctgtccatcgcttattagtaatctgcatctaaatcatatgattgctattcagtttacgacaattaataaa 23049031  T
Q  515 atagctcag 523  Q
    |||||||||    
T  23049030 atagctcag 23049022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 217 - 523
Target Start/End: Original strand, 17544573 - 17544879
Alignment:
Q  217 tgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaat 316  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||||  ||||| |||||||||||  ||||||||| |||    
T  17544573 tgatacaaaattagcaagtgtactaatttatatcgaagtaataatttaatttgtatccacaaggac--tgttccaatctctacttgacaatttcatcaat 17544670  T
Q  317 atttaggatgtatgtaaatgggggttgcactaggc-agttgg-tttgattgc-ataaaaagtaaataaatgatgaagaataaaatcggttttgagatgtg 413  Q
    ||| ||||||||||||||||||||||||  ||||| | |||| |||| |||| || | || |||||||||||  || |  ||| | |||||||| || ||    
T  17544671 attcaggatgtatgtaaatgggggttgccttaggcaaattggttttggttgcaatgataaataaataaatga--aaaatgaaacttggttttgaaatatg 17544768  T
Q  414 tttagagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaa-ca 512  Q
     |||||||| ||| || |||||| || |||||| | |||| |||||||||||||||||||||||| |||||| ||||||||| |||||||||||||| ||    
T  17544769 attagagaaaggactaggtcttttgaatcatctattcatcactcattagtaatctgcatctaaattatatgactgttattcagtttacgacaattaacca 17544868  T
Q  513 aaatagctcag 523  Q
    |||||||||||    
T  17544869 aaatagctcag 17544879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 285 - 523
Target Start/End: Complemental strand, 43683790 - 43683550
Alignment:
Q  285 tgttctaatctctacttagcaatttcattaatatttaggatgtatgtaaat-gggggttgcacta-ggcagttgg--tttgattgcataaaaagtaaata 380  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||  || ||||  | |  ||||||||||   |   ||||||    
T  43683790 tgttctaatctctacttagcaattttattaatatttaggatgtatgtaaatagggggttgccttaaggcaaattgattttgattgcaatga---taaata 43683694  T
Q  381 aatga-tgaagaataaaatcggttttgagatgtgtttagagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatc 479  Q
    ||| | |||| |||||| | |||||||| ||  | | |  |||  |||||  |||||||| |||||| ||||| |||||||| ||||||||| |||||||    
T  43683693 aataactgaaaaataaacttggttttgaaatacgataaacgaaaagattagatctttcgaatcatctatccattgctcattattaatctgcacctaaatc 43683594  T
Q  480 atatgattgttattcaatttacgacaattaacaaaatagctcag 523  Q
    |||  | || |||||||||||||| |||||||||||||||||||    
T  43683593 atacaaatgctattcaatttacgataattaacaaaatagctcag 43683550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 523
Target Start/End: Complemental strand, 50096797 - 50096724
Alignment:
Q  450 catcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaacaaaatagctcag 523  Q
    |||| ||| ||||||||||||| ||||||| ||||| ||||||||| ||||| |||||||||||||||| ||||    
T  50096797 catcactcgttagtaatctgcacctaaatcgtatgactgttattcagtttacaacaattaacaaaatagttcag 50096724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 290 - 372
Target Start/End: Complemental strand, 46542616 - 46542535
Alignment:
Q  290 taatctctacttagcaatttcattaatatttaggatgtatgtaaatgggggttgcactaggcagttggtttgattgcataaaa 372  Q
    |||| |||| ||||||||||||||||| |  | ||||||| ||||| |||||||| |||||||||||||||| ||||||||||    
T  46542616 taatttctatttagcaatttcattaatgtaaaagatgtat-taaattggggttgccctaggcagttggtttgtttgcataaaa 46542535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 28716501 - 28716552
Alignment:
Q  217 tgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattc 268  Q
    ||||| ||||||||||| ||||||||||||| ||||||||||||| ||||||    
T  28716501 tgatacaaaattagcaaatgtactaatttatgtcgaagtaataatataattc 28716552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 302
Target Start/End: Original strand, 6765023 - 6765106
Alignment:
Q  216 ctgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctactta 302  Q
    |||||| |||||||||||||||||||||||  |||| |||||||| |||||||   ||| |||||||  |||| |||||||||||||    
T  6765023 ctgatagaaaattagcaagtgtactaatttgaatcg-agtaataaattaattcgtttcctcagggac--tgttttaatctctactta 6765106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 260
Target Start/End: Original strand, 10557810 - 10557845
Alignment:
Q  225 aattagcaagtgtactaatttatatcgaagtaataa 260  Q
    |||||||||||||||||| |||||||||||||||||    
T  10557810 aattagcaagtgtactaacttatatcgaagtaataa 10557845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 19194095 - 19194052
Alignment:
Q  217 tgataaaaaattagcaagtgtactaatttatatcgaagtaataa 260  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||    
T  19194095 tgatagaaaatttgcaagtgtactaacttatatcgaagtaataa 19194052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 25240768 - 25240725
Alignment:
Q  29 gattagctagtgtcatcccaccccatga-cattcatgtatcctg 71  Q
    |||||||||||||||||||||||||||| |||||||||| ||||    
T  25240768 gattagctagtgtcatcccaccccatgaccattcatgtaccctg 25240725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 302
Target Start/End: Complemental strand, 6732220 - 6732138
Alignment:
Q  217 tgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctactta 302  Q
    ||||| |||||||||||||||||||||||  |||| |||||||| |||||||   ||| |||||||  |||| |||||||||||||    
T  6732220 tgatagaaaattagcaagtgtactaatttgaatcg-agtaataaattaattcgtttcctcagggac--tgttttaatctctactta 6732138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 479
Target Start/End: Original strand, 28716731 - 28716793
Alignment:
Q  417 agagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatc 479  Q
    |||||| |||| | |||||||||||||||| | |||| |||||||||||||||| | ||||||    
T  28716731 agagaaaggatcaggtctttcgattcatctattcatcactcattagtaatctgcttataaatc 28716793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 302
Target Start/End: Complemental strand, 53190117 - 53190035
Alignment:
Q  217 tgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctactta 302  Q
    ||||| |||||||||||||||||||||||  |||| |||||||| |||||||   ||| |||||||  |||| |||||||||||||    
T  53190117 tgatagaaaattagcaagtgtactaatttgaatcg-agtaataaattaattcgtttcctcagggac--tgttttaatctctactta 53190035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 158; Significance: 8e-84; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 27188649 - 27188850
Alignment:
Q  16 agatgaaggtaaggattagctagtgtcatcccaccccatgacattcatgtatcctgttaaaatccagcaatccattgagtcatatgaggttaatgtgctt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||    
T  27188649 agatgaaggtaaggattagctagtgtcatcccaccccatgacattcatgtatcctgttaaaatccagcatcccattgagtcatatgaggtcaatgtgctt 27188748  T
Q  116 gttgctcttgtcggagagtatggcacaaccaaccaaaaatagcatgaaatcccttacacaccaatcctgcatgttagctttctcttattcctccctgtcc 215  Q
    |||||||| |||||||||||||| |||||||||||||||||| ||||||||||| ||||||  ||| |||||||||||||||||||||||||||| ||||    
T  27188749 gttgctctcgtcggagagtatggtacaaccaaccaaaaatagtatgaaatccctcacacacatatcttgcatgttagctttctcttattcctccccgtcc 27188848  T
Q  216 ct 217  Q
    ||    
T  27188849 ct 27188850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 27838463 - 27838664
Alignment:
Q  16 agatgaaggtaaggattagctagtgtcatcccaccccatgacattcatgtatcctgttaaaatccagcaatccattgagtcatatgaggttaatgtgctt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||    
T  27838463 agatgaaggtaaggattagctagtgtcatcccaccccatgacattcatgtatcctgttaaaatccagcatcccattgagtcatatgaggtcaatgtgctt 27838562  T
Q  116 gttgctcttgtcggagagtatggcacaaccaaccaaaaatagcatgaaatcccttacacaccaatcctgcatgttagctttctcttattcctccctgtcc 215  Q
    |||||||| |||||||||||||| |||||||||||||||||| ||||||||||| ||||||  ||| |||||||||||||||||||||||||||| ||||    
T  27838563 gttgctctcgtcggagagtatggtacaaccaaccaaaaatagtatgaaatccctcacacacatatcttgcatgttagctttctcttattcctccccgtcc 27838662  T
Q  216 ct 217  Q
    ||    
T  27838663 ct 27838664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 348 - 523
Target Start/End: Complemental strand, 3252540 - 3252364
Alignment:
Q  348 aggcagttggtttgattgcataaaaagtaaataaatga-tgaagaataaaatcggttttgagatgtgtttagagaagggattaagtctttcgattcatct 446  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||  |||||||||||||||||||||||    
T  3252540 aggcagttggtttgattgcataaaaagtaaataaatgactgaagaataaaatcggttttgaaatatgtttagagacaggattaagtctttcgattcatct 3252441  T
Q  447 gtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaacaaaatagctcag 523  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3252440 gtccatcactcattagtaatctgcatctaaatcatatgattgttattcagtttacgacaattaacaaaatagctcag 3252364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 6276923 - 6276965
Alignment:
Q  218 gataaaaaattagcaagtgtactaatttatatcgaagtaataa 260  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  6276923 gataaaaaattagcaagtgtactaacttatatcgaagtaataa 6276965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 223 - 260
Target Start/End: Complemental strand, 16881642 - 16881605
Alignment:
Q  223 aaaattagcaagtgtactaatttatatcgaagtaataa 260  Q
    |||||||||||||||||||| |||||||||||||||||    
T  16881642 aaaattagcaagtgtactaacttatatcgaagtaataa 16881605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 223 - 260
Target Start/End: Complemental strand, 17039332 - 17039295
Alignment:
Q  223 aaaattagcaagtgtactaatttatatcgaagtaataa 260  Q
    |||||||||||||||||||| |||||||||||||||||    
T  17039332 aaaattagcaagtgtactaacttatatcgaagtaataa 17039295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 33749774 - 33749731
Alignment:
Q  217 tgataaaaaattagcaagtgtactaatttatatcgaagtaataa 260  Q
    ||||| ||| |||||||||||||||| |||||||||||||||||    
T  33749774 tgatacaaatttagcaagtgtactaacttatatcgaagtaataa 33749731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 260
Target Start/End: Complemental strand, 35077263 - 35077228
Alignment:
Q  225 aattagcaagtgtactaatttatatcgaagtaataa 260  Q
    |||||||||||||||||| |||||||||||||||||    
T  35077263 aattagcaagtgtactaacttatatcgaagtaataa 35077228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 260
Target Start/End: Complemental strand, 35080521 - 35080486
Alignment:
Q  225 aattagcaagtgtactaatttatatcgaagtaataa 260  Q
    |||||||||||||||||| |||||||||||||||||    
T  35080521 aattagcaagtgtactaacttatatcgaagtaataa 35080486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 4e-64; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 321 - 523
Target Start/End: Original strand, 27805468 - 27805674
Alignment:
Q  321 aggatgtatgtaaatgggggttgcactaggcagttggtttgattgcataaaaagtaaat---aaatga-tgaagaataaaatcggttttgagatgtgttt 416  Q
    |||||||||  ||||||||||||  ||||||||||||||||||||||||||||||||||   |||||| |||||||||||||||||||||| || |||||    
T  27805468 aggatgtattaaaatgggggttgtcctaggcagttggtttgattgcataaaaagtaaattataaatgactgaagaataaaatcggttttgaaatatgttt 27805567  T
Q  417 agagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaacaaaat 516  Q
    |||||| ||||||||||||| |||||||||||||||| | |||| ||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||    
T  27805568 agagaaaggattaagtcttttgattcatctgtccatctcacattggtaatctgcatttaaatcatatgattgctattcagtttacgacaattaacaaaat 27805667  T
Q  517 agctcag 523  Q
    || ||||    
T  27805668 agttcag 27805674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 375 - 523
Target Start/End: Original strand, 8855839 - 8855987
Alignment:
Q  375 taaataaatga-tgaagaataaaatcggttttgagatgtgtttagagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatc 473  Q
    ||||||||||| | ||||||||||| |||||||| || | |||||||||  ||||| ||||| ||| |||| |||||||| ||||||||||||| |||||    
T  8855839 taaataaatgactaaagaataaaattggttttgaaatatatttagagaaaagattaggtctt-cgaatcatttgtccatcactcattagtaatccgcatc 8855937  T
Q  474 taaatcatatgattgttattcaatttacgacaattaacaaaatagctcag 523  Q
    ||||| || | |||| || |||||||||||||||||||||| || |||||    
T  8855938 taaattatttaattgctactcaatttacgacaattaacaaagtatctcag 8855987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 375 - 523
Target Start/End: Original strand, 8857312 - 8857460
Alignment:
Q  375 taaataaatga-tgaagaataaaatcggttttgagatgtgtttagagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatc 473  Q
    ||||||||||| | ||||||||||| |||||||| || | |||||||||  ||||| ||||| ||| |||| |||||||| ||||||||||||| |||||    
T  8857312 taaataaatgactaaagaataaaattggttttgaaatatatttagagaaaagattaggtctt-cgaatcatttgtccatcactcattagtaatccgcatc 8857410  T
Q  474 taaatcatatgattgttattcaatttacgacaattaacaaaatagctcag 523  Q
    ||||| || | |||| || |||||||||||||||||||||| || |||||    
T  8857411 taaattatttaattgctactcaatttacgacaattaacaaagtatctcag 8857460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 347
Target Start/End: Original strand, 2847580 - 2847715
Alignment:
Q  217 tgataaaaaattagcaagtgtactaatttatatcgaagtaata--attta----attctaatccacagggactgtgttctaatctctacttagcaatttc 310  Q
    ||||| |||||||||||||||||||| ||||||||||||||||  |||||    ||||  ||||||||||||||| ||| ||  ||||||  | ||| ||    
T  2847580 tgatagaaaattagcaagtgtactaacttatatcgaagtaataacatttataagattcgtatccacagggactgt-ttc-aacttctactcggtaatgtc 2847677  T
Q  311 attaatatttaggatgtatgt-aaatgggggttgcact 347  Q
    |||| |||| ||||||||||| ||||||||||||||||    
T  2847678 attattattaaggatgtatgtaaaatgggggttgcact 2847715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 217 - 325
Target Start/End: Complemental strand, 10649672 - 10649566
Alignment:
Q  217 tgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaat 316  Q
    ||||||||  |||||| || |||||||||| ||| ||||||||||| ||||   ||||||| |||||    |||||||||| |||||||||||||| |||    
T  10649672 tgataaaattttagcatgtatactaatttaaatcaaagtaataattaaatttgtatccacaaggactag--tctaatctcttcttagcaatttcatcaat 10649575  T
Q  317 atttaggat 325  Q
    ||| |||||    
T  10649574 attcaggat 10649566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 31467955 - 31468038
Alignment:
Q  289 ctaatctctacttagcaatttcattaatatttaggatgtatgtaaatgggggttgcactaggcagttggtttgattgcataaaaa 373  Q
    ||||| |||||||||||||| ||||||| |  | | ||||| |||||  ||||||| ||||||| ||||||||||||||||||||    
T  31467955 ctaatttctacttagcaattgcattaatgtaaaagttgtat-taaatttgggttgccctaggcaattggtttgattgcataaaaa 31468038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 33383715 - 33383671
Alignment:
Q  217 tgataaaaaattagcaagtgtactaatttatatcgaagtaataat 261  Q
    ||||| |||||||||||||||||||| |||||| |||||||||||    
T  33383715 tgatagaaaattagcaagtgtactaacttatatggaagtaataat 33383671  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 260
Target Start/End: Complemental strand, 5952473 - 5952438
Alignment:
Q  225 aattagcaagtgtactaatttatatcgaagtaataa 260  Q
    |||||||||||||||||| |||||||||||||||||    
T  5952473 aattagcaagtgtactaacttatatcgaagtaataa 5952438  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 8855083 - 8855123
Alignment:
Q  227 ttagcaagtgtactaatttatatcgaagtaataatttaatt 267  Q
    ||||||||| || ||||||||| ||||||||||||||||||    
T  8855083 ttagcaagtttattaatttataccgaagtaataatttaatt 8855123  T

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Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 386 - 523
Target Start/End: Original strand, 34855570 - 34855707
Alignment:
Q  386 tgaagaataaaatcggttttgagatgtgtttagagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatga 485  Q
    ||||||||||||| |||||||| || |||||| |||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |||| |||||||    
T  34855570 tgaagaataaaataggttttgaaatatgtttaaagaaaggattaagtctttcgatttatctgtccatcactcattagtaatctgcatttaaaacatatga 34855669  T
Q  486 ttgttattcaatttacgacaattaacaaaatagctcag 523  Q
    ||  |||||| |||||||||||||||||||||||||||    
T  34855670 tttctattcagtttacgacaattaacaaaatagctcag 34855707  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 383
Target Start/End: Original strand, 33493575 - 33493612
Alignment:
Q  346 ctaggcagttggtttgattgcataaaaagtaaataaat 383  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33493575 ctaggcagttggtttgattgcataaaaagtaaataaat 33493612  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 21557366 - 21557456
Alignment:
Q  227 ttagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaatatt 319  Q
    |||| ||||||||||| |||||| ||| |||||||| ||||   |||||| | |||| | ||  |||||||||||||||||||||||||||||    
T  21557366 ttagtaagtgtactaaattatatagaattaataattaaatttgtatccacggtgactatttt--aatctctacttagcaatttcattaatatt 21557456  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 302
Target Start/End: Complemental strand, 14617745 - 14617662
Alignment:
Q  216 ctgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctactta 302  Q
    |||||| |||||||||||||||||||||||  |||| |||||||| |||||||   ||| |||||||  |||| |||||||||||||    
T  14617745 ctgatagaaaattagcaagtgtactaatttgaatcg-agtaataaattaattcgtttcctcagggac--tgttttaatctctactta 14617662  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 25186399 - 25186356
Alignment:
Q  217 tgataaaaaattagcaagtgtactaatttatatcgaagtaataa 260  Q
    ||||| |||||||||||||| ||||||||| |||||||||||||    
T  25186399 tgatagaaaattagcaagtgaactaatttaaatcgaagtaataa 25186356  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 54900123 - 54900089
Alignment:
Q  226 attagcaagtgtactaatttatatcgaagtaataa 260  Q
    ||||||||||||||||| |||||||||||||||||    
T  54900123 attagcaagtgtactaacttatatcgaagtaataa 54900089  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 12194811 - 12194783
Alignment:
Q  217 tgataaaaaattagcaagtgtactaattt 245  Q
    |||||||||||||||||||||||||||||    
T  12194811 tgataaaaaattagcaagtgtactaattt 12194783  T

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Target: scaffold0086 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 217 - 344
Target Start/End: Complemental strand, 24295 - 24170
Alignment:
Q  217 tgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaat 316  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||  |||||||||||||||||  ||||||||| |||    
T  24295 tgatagaaaattagcaagtgtattaatttatatcgaagtaataatttaattcgtatccacaaggac--tgttctaatctctacttgacaatttcatcaat 24198  T
Q  317 atttaggatgtatgtaaatgggggttgc 344  Q
    ||| ||||||||||||||||||||||||    
T  24197 attcaggatgtatgtaaatgggggttgc 24170  T

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Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 227 - 344
Target Start/End: Complemental strand, 28957361 - 28957245
Alignment:
Q  227 ttagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaatatttaggatg 326  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||| ||||||||||||||||| | ||||    
T  28957361 ttagcaagtgtactaatttatatcgaagtaataatttaattcgtatccacagggac--tgttctaatctctacttggcaatttcattaatattcaagatg 28957264  T
Q  327 tatgtaaa-tgggggttgc 344  Q
    |||||||| ||||||||||    
T  28957263 tatgtaaattgggggttgc 28957245  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 456 - 523
Target Start/End: Complemental strand, 8435256 - 8435189
Alignment:
Q  456 tcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaacaaaatagctcag 523  Q
    |||||||||||||||| ||||||| ||||  ||||||||| ||||| |||||||||||||||||||||    
T  8435256 tcattagtaatctgcacctaaatcgtatggctgttattcagtttacaacaattaacaaaatagctcag 8435189  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 251 - 325
Target Start/End: Original strand, 28411804 - 28411876
Alignment:
Q  251 gaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaatatttaggat 325  Q
    |||||||||||| |||||  |||||| |||||| |  ||||||||||||||||||||||||| |||||| |||||    
T  28411804 gaagtaataattaaattcgtatccaccgggactat--tctaatctctacttagcaatttcataaatattcaggat 28411876  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 25662856 - 25662893
Alignment:
Q  223 aaaattagcaagtgtactaatttatatcgaagtaataa 260  Q
    |||||||||||||||||||| |||||||||||||||||    
T  25662856 aaaattagcaagtgtactaacttatatcgaagtaataa 25662893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 21911039 - 21911082
Alignment:
Q  217 tgataaaaaattagcaagtgtactaatttatatcgaagtaataa 260  Q
    ||||| |||||||||||||||||||| ||||||||||| |||||    
T  21911039 tgatacaaaattagcaagtgtactaacttatatcgaagaaataa 21911082  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 260
Target Start/End: Original strand, 28138611 - 28138646
Alignment:
Q  225 aattagcaagtgtactaatttatatcgaagtaataa 260  Q
    |||||||||||||||||| |||||||||||||||||    
T  28138611 aattagcaagtgtactaacttatatcgaagtaataa 28138646  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 260
Target Start/End: Original strand, 28141861 - 28141896
Alignment:
Q  225 aattagcaagtgtactaatttatatcgaagtaataa 260  Q
    |||||||||||||||||| |||||||||||||||||    
T  28141861 aattagcaagtgtactaacttatatcgaagtaataa 28141896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 14159063 - 14159100
Alignment:
Q  223 aaaattagcaagtgtactaatttatatcgaagtaataa 260  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  14159063 aaaattaacaagtgtactaacttatatcgaagtaataa 14159100  T

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Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 431 - 523
Target Start/End: Original strand, 11184047 - 11184139
Alignment:
Q  431 gtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaacaaaatagctcag 523  Q
    |||||| || |||||| | |||| ||||||||||||||||| ||||||| ||||| ||||||||| ||||| |||||||||||||||||||||    
T  11184047 gtcttttgaatcatctattcatcactcattagtaatctgcacctaaatcgtatgactgttattcagtttacaacaattaacaaaatagctcag 11184139  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 965115 - 965071
Alignment:
Q  216 ctgataaaaaattagcaagtgtactaatttatatcgaagtaataa 260  Q
    |||||| |||||||||||||||||||| |||||||||||||||||    
T  965115 ctgatagaaaattagcaagtgtactaacttatatcgaagtaataa 965071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 17733248 - 17733291
Alignment:
Q  217 tgataaaaaattagcaagtgtactaatttatatcgaagtaataa 260  Q
    ||||| |||||||||||||||||||| |||||||||||||||||    
T  17733248 tgatagaaaattagcaagtgtactaacttatatcgaagtaataa 17733291  T

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Target: scaffold0884 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 4288 - 4332
Alignment:
Q  216 ctgataaaaaattagcaagtgtactaatttatatcgaagtaataa 260  Q
    |||||| | |||||||||||||||||| |||||||||||||||||    
T  4288 ctgatagataattagcaagtgtactaacttatatcgaagtaataa 4332  T

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Target: scaffold0050 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 338
Target Start/End: Original strand, 38512 - 38563
Alignment:
Q  287 ttctaatctctacttagcaatttcattaatatttaggatgtatgtaaatggg 338  Q
    ||||||||||| | |||||||||||||||||||||  |||||| ||||||||    
T  38512 ttctaatctcttcgtagcaatttcattaatatttaaaatgtatttaaatggg 38563  T

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Target: scaffold0012 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 157452 - 157409
Alignment:
Q  217 tgataaaaaattagcaagtgtactaatttatatcgaagtaataa 260  Q
    ||||| ||||||||||| |||||||| |||||||||||||||||    
T  157452 tgatacaaaattagcaaatgtactaacttatatcgaagtaataa 157409  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 302
Target Start/End: Original strand, 199632 - 199715
Alignment:
Q  216 ctgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctactta 302  Q
    |||||| |||||||||||||||||||||||  |||| |||||||| |||||||   ||| |||||||  |||| |||||||||||||    
T  199632 ctgatagaaaattagcaagtgtactaatttgaatcg-agtaataaattaattcgtttcctcagggac--tgttttaatctctactta 199715  T

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