View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_high_12 (Length: 543)
Name: NF17841_high_12
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 14 - 527
Target Start/End: Complemental strand, 41523013 - 41522499
Alignment:
| Q |
14 |
attctcaaaagtcaggagttataaataaataaaaactgcatttccacgtgaataatacttattaaaatgaatcctagcttaattttactccacacacac- |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41523013 |
attctcaaaagtcaggagttataaataaataaaaactgcatttccacgtgaataatacttattaaaatgaatcctagcttaattttactccacacacaca |
41522914 |
T |
|
| Q |
113 |
-taattataaaaccagctgaattttattcaacacttccccgtacatatacaagcaaatgtgaggaagtgaaacatatacaagcaaatttattaccttatt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41522913 |
ctaattataaaaccagctgaattttattcaacacttccccgtacatatacaagcaaatgtgaggaagtgaaacatatacgagcaaatttattaccttatt |
41522814 |
T |
|
| Q |
212 |
taaaagagagnnnnnnncacaatttggagcagaaagaggatctaatatttacaaattacaataattaaatctttagttgatgtaccacgagataatatga |
311 |
Q |
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| T |
41522813 |
tgaaagagagagaaaa-cacaatttggagcagaaagaggatctaatatttacaaattacaataattaaatctttagttgatgtaccacgagataatatga |
41522715 |
T |
|
| Q |
312 |
gtgaaatgagctcgatttctttaaatgtgaggtctatgtttcgattactatgtttgcgaatagaccaatctccattgaaagagatttttagtgttgaacg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41522714 |
gtgaaatgagctcgatttctttaaatgtgaggtctatgtttcgattactatgtttgcgaatagaccaatctccattgaaagagatttttagtgttgaacg |
41522615 |
T |
|
| Q |
412 |
atttctcaataggttagtctttgtatgtgcacgtagaaatattttgatttgacataaaacttgtttgaagtgaagtggcactccatgaactatgtcattc |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41522614 |
atttctcaataggttagtctttgtatgtgcacgtagaaatattttgatttgacataaaacttgtttgaagtgaagtggcactccatgaactatgtcattc |
41522515 |
T |
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| Q |
512 |
ttccacggatcatatt |
527 |
Q |
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|||||||||||||||| |
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| T |
41522514 |
ttccacggatcatatt |
41522499 |
T |
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