View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_high_13 (Length: 532)
Name: NF17841_high_13
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_high_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 4 - 532
Target Start/End: Complemental strand, 44695907 - 44695378
Alignment:
| Q |
4 |
attatactgaaataattgtttattttttattagatgttctttacaaggactatgttaatcaatcacctattcactttcactaccaattcatggattggaa |
103 |
Q |
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| T |
44695907 |
attatactgaaataattgtttattttttattagatgttctttacaaggactatgttaatcaatcacctattcactttcactaccaattcatggattggaa |
44695808 |
T |
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| Q |
104 |
tgcaggcttctcttgtaaaggtattgtgaacatcaacttagcttatgtttggaactgcggtgatcggtgaaaactgttttagattgcaagaatgagatgg |
203 |
Q |
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| T |
44695807 |
tgcaggcttctcttgtaaaggtattgtgaacatcaacttagcttatgtttggaactgtggtgatcggtgaaaactgttttagattgcaagaatgagatgg |
44695708 |
T |
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| Q |
204 |
ctaccgcggatccaaacataggcttaatcctttacttttatttttctacatatggttgaaacta-nnnnnnnnnnnnnnnnagccaaatgttattctgtt |
302 |
Q |
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| T |
44695707 |
ctaccgcggatccaaacataggcttaatcctttacttttatttttctacatatggttgaaactattttttttttcttttttagccaaatgttattctgtt |
44695608 |
T |
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| Q |
303 |
ggaagtatggataacaaatgaatgagcaaactgatattttgctcattgatttcttactgaatgattcaatgattcagtcctcaaatttttcaaactttct |
402 |
Q |
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| T |
44695607 |
ggaagtatggataacaaatgaatgagcaaactgatattttgctcattgatttcttactgaatgattcaatgatttagtcctcaaatttttcaaactttct |
44695508 |
T |
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| Q |
403 |
cccatcattccattttctatcttttagtcaagtttgaatcatttaaatactaaatcatatcgattatttaaatcaagggtggaattgaacgtaaattacg |
502 |
Q |
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| T |
44695507 |
cccatcattcctttttctatcttttagtcaagtttgaatcatttaaatactaaatcatatcaattatttaaatcaagggtggaattgaacgtaaattaca |
44695408 |
T |
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| Q |
503 |
atgaagattactccataacaaaataccatt |
532 |
Q |
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| T |
44695407 |
atgaagattactccataacaaaataccatt |
44695378 |
T |
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