View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17841_high_15 (Length: 500)
Name: NF17841_high_15
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_high_15 |
 | |
|
| [»] scaffold0024 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 162; Significance: 3e-86; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 314 - 491
Target Start/End: Complemental strand, 10720836 - 10720659
Alignment:
| Q |
314 |
tttgacatctgattacctccggaacctatttagttttattataaatttcatacaatcaagtgtttaatcaactattgatggaaaacatgaatttagtcaa |
413 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10720836 |
tttgatatctgattacctctggaacctatttagttttattataaatttcatacaatcaagtgtttaatcaactattgatggaaaacatgaatttagtcaa |
10720737 |
T |
|
| Q |
414 |
cctagttttagaatcataaaaaagttgtagaatcgtatttagcttcattatctatttattacttacactgagaataat |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
10720736 |
cctagttttagaatcataaaaaagttgtagaatcgtatttagcttcattatctatatattacttacactgataataat |
10720659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 10721518 - 10721365
Alignment:
| Q |
18 |
ctaagaaaataaagcactttgtcattggtcaagacaacacataccactttttcattaggcaaaacaatgcatacctcttttatattggtgaagacaacat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10721518 |
ctaagaaaataaagcactttgtcattggtcaagacaacacataccactttttcattaggcaaaacaatgcatacctcttttatattggtgaagacaacat |
10721419 |
T |
|
| Q |
118 |
atgtctctttctcgttggggatagcaccttgtctacctatttctttcataaaag |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
10721418 |
atgtctctttctcgttggggatagcaccttgtctacctctttctttcacaaaag |
10721365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 10721184 - 10721080
Alignment:
| Q |
168 |
aaagtaaatttacaaaactacttttgtgaaagaaagaggtagatgaggtggtgtcgccaacgagaaagtgacatatgttgtcttggccaatagaaaagag |
267 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
10721184 |
aaagtaaatatacaaaactacttttgtgaaagaaagaggtagatgaggtggtgtgaccaatgagaaagagacaaatgttgtcttggccaatagaaaagag |
10721085 |
T |
|
| Q |
268 |
gcatg |
272 |
Q |
| |
|
||||| |
|
|
| T |
10721084 |
gcatg |
10721080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 10721349 - 10721445
Alignment:
| Q |
172 |
taaatttacaaaactacttttgtgaaagaaagaggtagatgaggtggtgtcgccaacgagaaagtgacatatgttgtcttggccaatagaaaagagg |
268 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||| ||||| | || |||||||||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
10721349 |
taaatttataaaactgcttttgtgaaagaaagaggtagacaaggtgctatccccaacgagaaagagacatatgttgtcttcaccaatataaaagagg |
10721445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 173
Target Start/End: Original strand, 10721057 - 10721166
Alignment:
| Q |
64 |
ctttttcattaggcaaaacaatgcatacctcttttatattggtgaagacaacatatgtctctttctcgttggggatagcaccttgtctacctatttcttt |
163 |
Q |
| |
|
|||||||||||| ||| ||||| ||| |||||||| |||||| |||||||||| |||||||||||| |||| | | ||||| ||||||| ||||||| |
|
|
| T |
10721057 |
ctttttcattagccaagacaatacatgcctcttttctattggccaagacaacatttgtctctttctcattggtcacaccacctcatctacctctttcttt |
10721156 |
T |
|
| Q |
164 |
cataaaagta |
173 |
Q |
| |
|
|| ||||||| |
|
|
| T |
10721157 |
cacaaaagta |
10721166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 274 - 312
Target Start/End: Complemental strand, 10720974 - 10720936
Alignment:
| Q |
274 |
accctaaaggttctacgcctcttactgtgttctccttgc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10720974 |
accctaaaggttctacgcctcttactgtgttctccttgc |
10720936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 124512 - 124412
Alignment:
| Q |
34 |
ctttgtcattggtcaagacaacacataccactttttcattaggcaaaacaatgcatacctcttttatattggtgaagacaacatatgtctctttctcgtt |
133 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| ||||| || ||| ||||| |||||||| ||||||| |||||||||| |||||||||||| || |
|
|
| T |
124512 |
ctttgtcattggtcaagacaacacatgcctcttttt-attagccatgacagtgcatgcctcttttctattggtcaagacaacatgtgtctctttctcatt |
124414 |
T |
|
| Q |
134 |
gg |
135 |
Q |
| |
|
|| |
|
|
| T |
124413 |
gg |
124412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 124394 - 124460
Alignment:
| Q |
206 |
gtagatgaggtggtgtcgccaacgagaaagtgacatatgttgtcttggccaatagaaaagaggcatg |
272 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| |||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
124394 |
gtagatgaggtggtgtggccaatgagaaagagacacatgttgtcttgaccaatagaaaagaggcatg |
124460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University