View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_high_18 (Length: 467)
Name: NF17841_high_18
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 209 - 453
Target Start/End: Complemental strand, 42965683 - 42965447
Alignment:
| Q |
209 |
tgggttagagtatccattctatagcattcagtaagccaatnnnnnnnttggagataaacttacagaataacaattttaaaatttggaagactaattccac |
308 |
Q |
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| T |
42965683 |
tgggttagagtatccattctatagcattcagtaagccaataaaaaa-ttggagataaacttacagaataacaattttaaaatttgaaagactaattccac |
42965585 |
T |
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| Q |
309 |
tcnnnnnnnttactgacaaattaaaatcacatattaactaagtatattatattatttgaatgaaaaaaggtacgaat--aggtagttgggtgtcctaata |
406 |
Q |
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| T |
42965584 |
tcaaaaaaattactgacaaattaaaatcacatattaacta--tat-ttatattatttgaatgaaaaaaggtacgaatagaggtagttgggtgtc------ |
42965494 |
T |
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| Q |
407 |
ctaatagctaatgacccatatttctcataataatgatacattattat |
453 |
Q |
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| T |
42965493 |
ctaatagctaatgacccatatttctcataataatgatacattattat |
42965447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 42965873 - 42965760
Alignment:
| Q |
14 |
catagggtgaggtaacatctattcacttgaatttttcttttnnnnnnntactgctaaataaatctagcataatttgaaaacatttactcatccgtaacta |
113 |
Q |
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| T |
42965873 |
cataggttgaggtaacatctattcacttcaatttttcttttaaaaaaatactgctaaat----ctaacataatttgaaaacatttactcatccgtaacta |
42965778 |
T |
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| Q |
114 |
aaaatcgttatcttgcat |
131 |
Q |
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| T |
42965777 |
aaaatcgttatcttgcat |
42965760 |
T |
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