View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17841_high_22 (Length: 433)

Name: NF17841_high_22
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17841_high_22
NF17841_high_22
[»] chr1 (4 HSPs)
chr1 (1-414)||(15594091-15594504)
chr1 (52-314)||(4679353-4679615)
chr1 (377-409)||(29465281-29465313)
chr1 (387-415)||(4679252-4679280)
[»] chr7 (17 HSPs)
chr7 (1-415)||(8586404-8586821)
chr7 (69-304)||(8615836-8616071)
chr7 (209-412)||(8653708-8653911)
chr7 (44-314)||(3146363-3146633)
chr7 (209-340)||(8666680-8666811)
chr7 (99-409)||(10495078-10495388)
chr7 (365-420)||(3146684-3146739)
chr7 (44-161)||(8645976-8646093)
chr7 (99-409)||(13334072-13334382)
chr7 (213-314)||(17259498-17259599)
chr7 (50-161)||(8640653-8640764)
chr7 (211-306)||(6788775-6788870)
chr7 (365-412)||(8646297-8646344)
chr7 (366-411)||(8616136-8616181)
chr7 (213-314)||(17267201-17267302)
chr7 (365-409)||(17267359-17267403)
chr7 (365-409)||(17275013-17275057)
[»] chr2 (6 HSPs)
chr2 (60-314)||(16662797-16663051)
chr2 (209-303)||(16658333-16658427)
chr2 (365-412)||(7541646-7541693)
chr2 (372-411)||(14702835-14702874)
chr2 (374-412)||(16658221-16658259)
chr2 (209-258)||(12246267-12246316)
[»] chr4 (3 HSPs)
chr4 (1-298)||(30774305-30774602)
chr4 (365-412)||(9336595-9336642)
chr4 (252-306)||(35131763-35131817)
[»] chr8 (3 HSPs)
chr8 (50-159)||(43743918-43744027)
chr8 (46-156)||(43445783-43445894)
chr8 (365-412)||(43744236-43744283)
[»] chr5 (1 HSPs)
chr5 (71-159)||(28219041-28219129)
[»] chr3 (1 HSPs)
chr3 (365-411)||(53416761-53416807)


Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 15594091 - 15594504
Alignment:
Q  1 gcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaactt 100  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15594091 gcaaatttgtagccactgtaattgcaccattgatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaactt 15594190  T
Q  101 gtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  15594191 gtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcatttttttaatt 15594290  T
Q  201 tcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  15594291 tcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcaggatagcattttcat 15594390  T
Q  301 cgatagcaaagcatctttcaaaggtctggccacggggacccgaagtgcaagaaagagtcaacataccaagaaaattattgtcactagctcttgctctctc 400  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15594391 cgatagcaaagcatccttcaaaggtctggccacggggacccgaagtgcaagaaagagtcaacataccaagcaaattattgtcactagctcttgctctctc 15594490  T
Q  401 accctcataaacct 414  Q
    ||||||||||||||    
T  15594491 accctcataaacct 15594504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 314
Target Start/End: Complemental strand, 4679615 - 4679353
Alignment:
Q  52 aagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaattt 151  Q
    ||||||| ||||| || |||||||| ||||| | ||||||  | |  |||||||||||    || |||||| |||||||||  ||||||||||  |||||    
T  4679615 aagagagctttaaattaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaattt 4679516  T
Q  152 ctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgta 251  Q
    || ||||||  | ||||||| ||| ||||||| |||||       || || | ||| || |||||||||||| ||||||||||| ||||||| ||| |||    
T  4679515 cttatcttcctcgcgatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgta 4679416  T
Q  252 ttgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagcat 314  Q
    || || || ||  |||| ||  |||||||||| | | | |||||| |||| ||||||||||||    
T  4679415 tttcctgtagacatttctttagcagaaacagttagggtgccatttgcatctatagcaaagcat 4679353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 377 - 409
Target Start/End: Original strand, 29465281 - 29465313
Alignment:
Q  377 attgtcactagctcttgctctctcaccctcata 409  Q
    |||||||||||||||||||||||||||||||||    
T  29465281 attgtcactagctcttgctctctcaccctcata 29465313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Complemental strand, 4679280 - 4679252
Alignment:
Q  387 gctcttgctctctcaccctcataaacctt 415  Q
    |||||||||||||||||||||||||||||    
T  4679280 gctcttgctctctcaccctcataaacctt 4679252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 8586821 - 8586404
Alignment:
Q  1 gcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaactt 100  Q
    ||||||||| ||||| ||||||||||  ||| |||||| |||||| || |||||||   |||| ||| | |||||||||||| |||||||| || |||||    
T  8586821 gcaaatttgtagccattgtaattgcatgattgatctttttaactttttgagaagagcactttagtttaatatccttattctttagagcattccttaactt 8586722  T
Q  101 gtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatt 200  Q
    ||||||||| |||||||||| |||||||||||  ||||||||||||||||||| ||| |||||  | ||  |||| |||||||||||||       ||||    
T  8586721 gtaaacacaatcatctaatgaattcattaccttagccttccttaggaatttctgatcctcagcgaggtacacctctgcttcttgaatcagtcttttaatt 8586622  T
Q  201 tcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcat 300  Q
    ||||  || || ||||||||||||||||||||||| || || |||||||||||||||| |||| |||||||| |||||||||| | ||||||||||||||    
T  8586621 tcatcagccgataacctttctttgtcattggttatcgttatttcgtttgtattgccagaggatatttccttcgcagaaacagttaggataccattttcat 8586522  T
Q  301 cgatagcaaagcatctttcaaaggtctggccacgggg---acccgaagtgcaagaaagagtcaacataccaagaaaattattgtcactagctcttgctct 397  Q
    |||| |  ||||||   |||||||  || ||||| ||   |||||    ||| |||||| | || |  ||||| | ||| ||||||||||||||||||||    
T  8586521 cgatggtgaagcatacctcaaagggatgcccacgaggagcacccgggacgcacgaaagattaaaaaagccaagcagattgttgtcactagctcttgctct 8586422  T
Q  398 ctcaccctcataaacctt 415  Q
    ||||||||||||||||||    
T  8586421 ctcaccctcataaacctt 8586404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 69 - 304
Target Start/End: Original strand, 8615836 - 8616071
Alignment:
Q  69 acatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgat 168  Q
    |||||||||||||| |||||||| |||||||||||||  |||||||||||| ||||||||||||  ||||||||||||||||| ||||||||||| || |    
T  8615836 acatccttattctttagagcattcctcaacttgtaaatgcagtcatctaattcattcattaccttggccttccttaggaatttttcatcttcagcgcggt 8615935  T
Q  169 attcctcggcttcttgaatcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttc 268  Q
    | ||||| |||||||||||||       ||||||||  || || ||||||||||||||||||||||| || || || |||||||||||||| ||| ||||    
T  8615936 actcctctgcttcttgaatcagttttttaatttcatcagccgataacctttctttgtcattggttatcgttatttcatttgtattgccagtagatttttc 8616035  T
Q  269 cttcacagaaacagtcatgataccattttcatcgat 304  Q
    |||| |||| ||||| | ||||||||| || |||||    
T  8616036 cttcgcagatacagtaaggataccattatcgtcgat 8616071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 209 - 412
Target Start/End: Original strand, 8653708 - 8653911
Alignment:
Q  209 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagca 308  Q
    ||||||||||||||| ||||| || || |||||||||||   | | |||||||   | |||||  |||||||||| | ||||||||||||||| || | |    
T  8653708 tgacaacctttctttctcattagtgatggtgatctcgttcagaattccagtggtgatatccttaccagaaacagttaagataccattttcatcaatggaa 8653807  T
Q  309 aagcatctttcaaaggtctggccacggggacccgaagtgcaagaaagagtcaacataccaagaaaattattgtcactagctcttgctctctcaccctcat 408  Q
    ||||||   || |||| ||| ||||||||||| | |  ||||||||| || || | |||||| | |||||||||||||||||||| ||||||||||||||    
T  8653808 aagcatacctccaagggctgaccacggggacctggaaggcaagaaagtgtaaataaaccaagcagattattgtcactagctcttggtctctcaccctcat 8653907  T
Q  409 aaac 412  Q
    ||||    
T  8653908 aaac 8653911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 44 - 314
Target Start/End: Original strand, 3146363 - 3146633
Alignment:
Q  44 ttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttcctt 143  Q
    ||||| ||| ||||| ||||  || |||||||| ||||| | ||||||| ||| |||||||||||| | |||||||||||||||||| |  |||||||||    
T  3146363 ttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttcctt 3146462  T
Q  144 aggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatct 243  Q
    || ||||| ||||| ||| |||| || |  || |||||||  ||||       |||||| |  | |||||| |||||||||||||| |||| ||| ||||    
T  3146463 agaaatttttcatcctcaacacggtaattttcagcttctttgatcatttttataatttcttgggatgacaatctttctttgtcattagttactgtaatct 3146562  T
Q  244 cgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagcat 314  Q
    | || ||| | ||||||||| |||| ||  |||||||| | | ||| |||||||||| ||||| |||||||    
T  3146563 cattcgtactaccagtggatttttcattagcagaaacaattaagatgccattttcattgatagtaaagcat 3146633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 209 - 340
Target Start/End: Original strand, 8666680 - 8666811
Alignment:
Q  209 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagca 308  Q
    ||||||||||||||||||||||||||| ||||||  |||  ||||||| |||||| ||||| |  ||| |||||||| ||||||||||||||| || | |    
T  8666680 tgacaacctttctttgtcattggttatggtgatcatgttcatattgcctgtggatatttccctagcagtaacagtcaggataccattttcatcaattgaa 8666779  T
Q  309 aagcatctttcaaaggtctggccacggggacc 340  Q
    ||||||   || |||| |||||||||||||||    
T  8666780 aagcatacctccaagggctggccacggggacc 8666811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 409
Target Start/End: Complemental strand, 10495388 - 10495078
Alignment:
Q  99 ttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaa 198  Q
    |||||||||||   |||||||||| |||||||||  |||||||||| |||||||  ||||||  || | |||| ||  ||||||| |||||       ||    
T  10495388 ttgtaaacacaagaatctaatgcactcattaccttggccttccttaagaatttcatatcttcgacatggtatttcttagcttctttaatcatttttttaa 10495289  T
Q  199 tttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttc 298  Q
    ||||  |   ||||||||||||||||||||| || || |||||| ||||  ||||||| || ||| | |||||  ||| |||||||| ||| ||||||||    
T  10495288 tttctaacattgacaacctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagatatatccttagcagtaacagtcaggatgccattttc 10495189  T
Q  299 atcgatagcaaagcatctttcaaaggtctggccacggggacccgaagtgcaagaaagagtcaacataccaagaaaattattgtcactagctcttgctctc 398  Q
    ||| || | |||||||   || |||| ||||||||| ||||| |||    ||  ||| |  ||   |||||| | |||||| ||||||||||||||||||    
T  10495188 atcaatggaaaagcatacctccaagggctggccacgaggacctgaaacataaccaagcgcaaatgaaccaagtagattattctcactagctcttgctctc 10495089  T
Q  399 tcaccctcata 409  Q
    |||||||||||    
T  10495088 tcaccctcata 10495078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 420
Target Start/End: Original strand, 3146684 - 3146739
Alignment:
Q  365 accaagaaaattattgtcactagctcttgctctctcaccctcataaaccttgatga 420  Q
    |||||| | ||| ||||||||||||||||||||||||||||||||||| |||||||    
T  3146684 accaagcagattgttgtcactagctcttgctctctcaccctcataaactttgatga 3146739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 8645976 - 8646093
Alignment:
Q  44 ttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttcctt 143  Q
    ||||||||| ||||| |||||||| ||||||||  |||| ||||| ||  ||| ||| ||||  || |  |||||| |||||||||| |  |||||||||    
T  8645976 ttctttagatgagagatttaatttaacatccttcctctttagagctttcttcagcttataaatgcaatggtctaatccattcattacattggccttcctt 8646075  T
Q  144 aggaatttctcatcttca 161  Q
    ||||||||||||||||||    
T  8646076 aggaatttctcatcttca 8646093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 409
Target Start/End: Complemental strand, 13334382 - 13334072
Alignment:
Q  99 ttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaa 198  Q
    |||||||||||   ||||||||||||||||||||  |||||||||| |||||||| ||||||  || | |||||||  ||||||| |||||       ||    
T  13334382 ttgtaaacacaagaatctaatgcattcattaccttggccttccttaagaatttcttatcttcgacatggtattccttagcttctttaatcattttttcaa 13334283  T
Q  199 tttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttc 298  Q
    ||||  |   ||| ||||||||||||||||| || || |||||| ||||  ||||||| || ||| | |||||  ||| ||| |||| ||| ||||||||    
T  13334282 tttctaacattgataacctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagatatatccttagcagtaaccgtcaggatgccattttc 13334183  T
Q  299 atcgatagcaaagcatctttcaaaggtctggccacggggacccgaagtgcaagaaagagtcaacataccaagaaaattattgtcactagctcttgctctc 398  Q
    ||| || | |||||||   || |||| ||| ||||| ||||| | |    ||  |||    ||   |||||| | |||||||||||||||||||||||||    
T  13334182 atcaatggaaaagcatacctccaagggctgaccacgcggacctggaacataatcaagcaaaaatgaaccaagtagattattgtcactagctcttgctctc 13334083  T
Q  399 tcaccctcata 409  Q
    |||||||||||    
T  13334082 tcaccctcata 13334072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 314
Target Start/End: Original strand, 17259498 - 17259599
Alignment:
Q  213 aacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagc 312  Q
    |||||| ||||||||||||||||||| ||||| ||  || ||||||||||| | ||| |  ||||||| ||||  |||||||||| ||||||| ||||||    
T  17259498 aaccttcctttgtcattggttattgtaatctcattcttactgccagtggatttgtccatagcagaaactgtcaaaataccattttgatcgatatcaaagc 17259597  T
Q  313 at 314  Q
    ||    
T  17259598 at 17259599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 161
Target Start/End: Complemental strand, 8640764 - 8640653
Alignment:
Q  50 agaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaat 149  Q
    ||||||||| |||| ||| | |||||||||||| ||||||||  ||| ||||||||  || |  |||||| |||||||||  |  |||||||||||||||    
T  8640764 agaagagagctttagtttaatatccttattctttagagcattcttcatcttgtaaatgcaatagtctaatccattcattaaattggccttccttaggaat 8640665  T
Q  150 ttctcatcttca 161  Q
    |||||| |||||    
T  8640664 ttctcagcttca 8640653  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 306
Target Start/End: Original strand, 6788775 - 6788870
Alignment:
Q  211 acaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatag 306  Q
    ||||||||||||||| ||||||||| || ||||| ||  ||||||| |||||| ||||  |  ||||||| ||||  |||||||||||||| ||||    
T  6788775 acaacctttctttgtaattggttatggtaatctcattcatattgcccgtggatttttcagtagcagaaacggtcaaaataccattttcatcaatag 6788870  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 412
Target Start/End: Original strand, 8646297 - 8646344
Alignment:
Q  365 accaagaaaattattgtcactagctcttgctctctcaccctcataaac 412  Q
    |||||| | ||| |||||||| ||||||||||||||||||||||||||    
T  8646297 accaagcagattgttgtcacttgctcttgctctctcaccctcataaac 8646344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 411
Target Start/End: Original strand, 8616136 - 8616181
Alignment:
Q  366 ccaagaaaattattgtcactagctcttgctctctcaccctcataaa 411  Q
    ||||| | ||| |||||||||||||||| |||||||||||||||||    
T  8616136 ccaagcagattgttgtcactagctcttgatctctcaccctcataaa 8616181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 314
Target Start/End: Original strand, 17267201 - 17267302
Alignment:
Q  213 aacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagc 312  Q
    |||||| ||||||||||||||||||| ||||| ||  || | ||||||||| | ||| |  ||||||| ||||  |||||||||| ||||| | ||||||    
T  17267201 aaccttcctttgtcattggttattgtaatctcattcttactaccagtggatttgtccatagcagaaactgtcaaaataccattttgatcgacatcaaagc 17267300  T
Q  313 at 314  Q
    ||    
T  17267301 at 17267302  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 17267359 - 17267403
Alignment:
Q  365 accaagaaaattattgtcactagctcttgctctctcaccctcata 409  Q
    |||||||| || ||||||||| ||||||| |||||||||||||||    
T  17267359 accaagaagatgattgtcacttgctcttggtctctcaccctcata 17267403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 17275013 - 17275057
Alignment:
Q  365 accaagaaaattattgtcactagctcttgctctctcaccctcata 409  Q
    |||||||| || ||||||||| ||||||| |||||||||||||||    
T  17275013 accaagaagatgattgtcacttgctcttggtctctcaccctcata 17275057  T

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Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 60 - 314
Target Start/End: Complemental strand, 16663051 - 16662797
Alignment:
Q  60 tttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatctt 159  Q
    ||||||||||||| ||||||||| |||||||| ||||| |||||||  |||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  16663051 tttaatttgacattcttattctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttctcatctt 16662952  T
Q  160 cagcacgatattcctcggcttcttgaatcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagt 259  Q
    ||||| | || ||||  |||||||||||||       ||||||   |   || ||||||||||||||||||||||| |||||||| ||  || | || ||    
T  16662951 cagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgtcattggttatcgtgatctcattcttacttccggt 16662852  T
Q  260 ggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagcat 314  Q
    |||| ||||||   | |||||||| | ||| || |||||||||||||||||||||    
T  16662851 ggatctttcctctgctgaaacagttaagatgccgttttcatcgatagcaaagcat 16662797  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 303
Target Start/End: Complemental strand, 16658427 - 16658333
Alignment:
Q  209 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcga 303  Q
    |||||| |||||||| ||||||||||| ||||||| ||||||||| || || |||  ||||||  |||||||||| | |||||||||||||||||    
T  16658427 tgacaatctttctttttcattggttatggtgatcttgtttgtatttcctgtagatacttccttagcagaaacagttaggataccattttcatcga 16658333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 412
Target Start/End: Original strand, 7541646 - 7541693
Alignment:
Q  365 accaagaaaattattgtcactagctcttgctctctcaccctcataaac 412  Q
    |||||| ||||| || ||||| ||||||||||||||||||||||||||    
T  7541646 accaagcaaattgttatcactggctcttgctctctcaccctcataaac 7541693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 411
Target Start/End: Original strand, 14702835 - 14702874
Alignment:
Q  372 aaattattgtcactagctcttgctctctcaccctcataaa 411  Q
    |||||||||||||| ||||||| |||||||||||||||||    
T  14702835 aaattattgtcactggctcttgttctctcaccctcataaa 14702874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 412
Target Start/End: Complemental strand, 16658259 - 16658221
Alignment:
Q  374 attattgtcactagctcttgctctctcaccctcataaac 412  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  16658259 attattgtcagcagctcttgctctctcaccctcataaac 16658221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 12246316 - 12246267
Alignment:
Q  209 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccag 258  Q
    ||||||||||||||||| ||| |||||||| ||||| |||| ||||||||    
T  12246316 tgacaacctttctttgtaattagttattgtaatctcatttgaattgccag 12246267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 30774305 - 30774602
Alignment:
Q  1 gcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaactt 100  Q
    ||||||||| |||||||| ||||||| || | |||||| | | || || ||| || || ||||| || || |||||| |||| ||| |||| ||||||||    
T  30774305 gcaaatttgtagccactgcaattgcatcagtgatctttttgagtttttgagatgatagctttaaatttacgtccttaatctttagaccattcctcaactt 30774404  T
Q  101 gtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatt 200  Q
    |||||  |||  |||||||||||||||||||   | |||||||||||||||||||||||||||||| || ||    |||||||||||||       ||||    
T  30774405 gtaaatgcagcaatctaatgcattcattaccatagacttccttaggaatttctcatcttcagcacggtactctctagcttcttgaatcattttgttaatt 30774504  T
Q  201 tcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttc 298  Q
    || | |   || |||||||||||||| |||||||| |||||||| ||  |||||||||||||| ||||| |  |||||||| |||  |||||||||||    
T  30774505 tcttctctggataacctttctttgtcgttggttatcgtgatctcattcatattgccagtggatttttccatagcagaaacattcagtataccattttc 30774602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 412
Target Start/End: Complemental strand, 9336642 - 9336595
Alignment:
Q  365 accaagaaaattattgtcactagctcttgctctctcaccctcataaac 412  Q
    |||||| | |||||||||| ||||||||| ||||||||||||||||||    
T  9336642 accaagcagattattgtcagtagctcttggtctctcaccctcataaac 9336595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 35131763 - 35131817
Alignment:
Q  252 ttgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatag 306  Q
    ||||| |||||| |||||||  ||||||||||||  |||||||||||||||||||    
T  35131763 ttgccggtggatttttccttagcagaaacagtcaaaataccattttcatcgatag 35131817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 43743918 - 43744027
Alignment:
Q  50 agaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaat 149  Q
    |||||| || |||||||| |||||||||||||| | |||||| |||||||||||||| || |||||||||||||||||||| |  || ||||| || |||    
T  43743918 agaagaaagctttaatttaacatccttattctttacagcattcctcaacttgtaaacccattcatctaatgcattcattacattggctttcctaagaaat 43744017  T
Q  150 ttctcatctt 159  Q
    ||||||||||    
T  43744018 ttctcatctt 43744027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 156
Target Start/End: Original strand, 43445783 - 43445894
Alignment:
Q  46 ctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaa-cacagtcatctaatgcattcattacctccgccttcctta 144  Q
    ||||||| ||||| |||||||| | |||||||||||| | | |||| |||||| |||||| | || |||||||||||||||||||| |  |||||||| |    
T  43445783 ctttagacgagagctttaatttaatatccttattctttacaacattcctcaacctgtaaaacccattcatctaatgcattcattacattggccttcctaa 43445882  T
Q  145 ggaatttctcat 156  Q
    | ||||||||||    
T  43445883 gaaatttctcat 43445894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 412
Target Start/End: Original strand, 43744236 - 43744283
Alignment:
Q  365 accaagaaaattattgtcactagctcttgctctctcaccctcataaac 412  Q
    |||||| | ||| |||||||| ||||||||||||||||||||||||||    
T  43744236 accaagcagattgttgtcacttgctcttgctctctcaccctcataaac 43744283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 28219041 - 28219129
Alignment:
Q  71 atccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatctt 159  Q
    |||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| || |  ||||||||||| ||||| |||||||    
T  28219041 atccttattctttagagcattcctcaacttgtaaacgcagtcatctaatgcattcatgacattggccttccttagaaatttttcatctt 28219129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 53416807 - 53416761
Alignment:
Q  365 accaagaaaattattgtcactagctcttgctctctcaccctcataaa 411  Q
    |||||| | |||||||||| ||||||||| |||||||||||||||||    
T  53416807 accaagcagattattgtcagtagctcttggtctctcaccctcataaa 53416761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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