View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_high_24 (Length: 401)
Name: NF17841_high_24
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 3 - 289
Target Start/End: Complemental strand, 11115608 - 11115320
Alignment:
| Q |
3 |
tatttctgtaatagaaacaattccaagaggtcctttcacaagcattggacgattccatatggttgtcccatgtttcttcccattgccactgattgtgcaa |
102 |
Q |
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| T |
11115608 |
tatttctgtaatagaaacaattccaagaggtcctttcacaagcattggacgattccatatggttgtcccatgtttcttcccattgccactgattgtgcaa |
11115509 |
T |
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| Q |
103 |
aaactcaaagattagatttataataattnnnnnnnnnnnnn--tcatacaagttaacaagattaagagaacaaaaatgttacatttccatgttgctctca |
200 |
Q |
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| T |
11115508 |
aaactcaaagattagatttataataatttaaaaataaaaaaaatcatacaagtaaacaagattaagagaacaaaaatgttacatttccatgttgctctca |
11115409 |
T |
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| Q |
201 |
tttgattttttggctatgtggagaaagacacatcccaaaatggctattaacaacactggaaaagtgtaaataagaatccttgtacctga |
289 |
Q |
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| T |
11115408 |
tttgattttttggctatgtggagaaagacacatcccaaagtggctattaacaacactggaaaagtgtaaataagaatccttgtacctga |
11115320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 11103754 - 11103652
Alignment:
| Q |
3 |
tatttctgtaatagaaacaattccaagaggtcctttcacaagcattggacgattccatatggttgtcccatgtttcttcccattgccactgattgtgcaa |
102 |
Q |
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| T |
11103754 |
tatttctgtgatagaaacaattccaagaggtccttttacaagcattggacggttccatatggttgtcccatgtttcttcccattgcgactgattgtgcaa |
11103655 |
T |
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| Q |
103 |
aaa |
105 |
Q |
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| T |
11103654 |
aaa |
11103652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 11590188 - 11590090
Alignment:
| Q |
7 |
tctgtaatagaaacaattccaagaggtcctttcacaagcattggacgattccatatggttgtcccatgtttcttcccattgccactgattgtgcaaaaa |
105 |
Q |
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| T |
11590188 |
tctgtgatagaaacaattccaagaggtccttttacaagcattggacggttccatatggttgtcccatgtttcttcccattgcgactgattgtacaaaaa |
11590090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 11103568 - 11103469
Alignment:
| Q |
172 |
aaaaatgttacatttccatgttgctctcatttgat---tttttggctatgtggagaaagacacatcccaaaatggctattaacaacactggaaaagtgta |
268 |
Q |
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| T |
11103568 |
aaaaatattacatttctatgttgctctcatttgatgattttttggctatgtggagatagacacatcccaaagtagcaattaacaagactggaaaagtgta |
11103469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 11590014 - 11589915
Alignment:
| Q |
172 |
aaaaatgttacatttccatgttgctctcatttgat---tttttggctatgtggagaaagacacatcccaaaatggctattaacaacactggaaaagtgta |
268 |
Q |
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| T |
11590014 |
aaaaatattacatttctatgttgctctcatttgatgattttttggctatgtggagatagacacatcccaaagtagcaattaacaagactggaaaagtgta |
11589915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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