View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_high_29 (Length: 345)
Name: NF17841_high_29
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 122 - 332
Target Start/End: Complemental strand, 26056606 - 26056394
Alignment:
| Q |
122 |
ctccaaaatcacacattcctttttctatatataggtatagatgaattctcatattcccatcaagaat--gtttgagaggctagtagttcaatcaaattca |
219 |
Q |
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| T |
26056606 |
ctccaaaatcacacattcctttttctatatataggtatagatgaattctcatattcccatcaagaatatgtttgagaggctagtagttcaatcaaattca |
26056507 |
T |
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| Q |
220 |
gtatcaaagtccaagtactgaatatctgtgctcaaactcaccacccaattcttcatttcttaattaaccctccaaaacttcacaaccctatataaccaga |
319 |
Q |
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| T |
26056506 |
gtttcaaagtcgaagtactgaatatctgtgctcaaactgacaacccaattctccatttcttaattaaccctccaaagcttcaaaaccctatataaccaga |
26056407 |
T |
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| Q |
320 |
actaaacgaaact |
332 |
Q |
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|| |||| ||||| |
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| T |
26056406 |
acaaaacaaaact |
26056394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 146 - 332
Target Start/End: Complemental strand, 26085817 - 26085631
Alignment:
| Q |
146 |
ctatatataggtatagatgaattctcatattcccatcaagaatgtttgagaggctagtagttcaatcaaattcagtatcaaagtccaagtactgaatatc |
245 |
Q |
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| T |
26085817 |
ctatatataggtatagatgaattctcatattcccatcaagaatgtttgagaggctagtagttcaatcaaattcagtatcaaagtcgaagtactgaatatc |
26085718 |
T |
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| Q |
246 |
tgtgctcaaactcaccacccaattcttcatttcttaattaaccctccaaaacttcacaaccctatataaccagaactaaacgaaact |
332 |
Q |
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| T |
26085717 |
tgcgctcaaactgaccacccaattctccatttcttaattaaccctccaaagcttcaaaaccctatataaccagaacaaaacaaaact |
26085631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 123 - 332
Target Start/End: Complemental strand, 26112173 - 26111968
Alignment:
| Q |
123 |
tccaaaatcacacattcctttttctatatataggtatagatgaattctcatattcccatcaagaatgtttgagaggctagtagttcaatcaaattcagta |
222 |
Q |
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| T |
26112173 |
tccaaaatcacatattcctttatctatatataggtatagatgtattctcatattcccatcaagaatatttgagaggctagtagttcaatcaaattcagtt |
26112074 |
T |
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| Q |
223 |
tcaaagtccaagtactgaatatctgtgctcaaactcaccacccaattcttcatttctta---attaaccctcc--aaaacttcacaaccctatataacca |
317 |
Q |
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| T |
26112073 |
tcaaag---------tgaatatctgtgctcaaactgaccacccaattcttcatttcttaattattaaccctcctataagcttcagaaccctatataacca |
26111983 |
T |
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| Q |
318 |
gaactaaacgaaact |
332 |
Q |
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|||| |||| ||||| |
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| T |
26111982 |
gaacaaaacaaaact |
26111968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 238 - 332
Target Start/End: Complemental strand, 26049083 - 26048989
Alignment:
| Q |
238 |
tgaatatctgtgctcaaactcaccacccaattcttcatttcttaattaaccctccaaaacttcacaaccctatataaccagaactaaacgaaact |
332 |
Q |
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| T |
26049083 |
tgaatatatgtgctcaaactgaccacccaattctccatttcttaattaaccctccaaagcttcaaaaccctatataaccagaacaaaacaaaact |
26048989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 238 - 332
Target Start/End: Complemental strand, 26068150 - 26068056
Alignment:
| Q |
238 |
tgaatatctgtgctcaaactcaccacccaattcttcatttcttaattaaccctccaaaacttcacaaccctatataaccagaactaaacgaaact |
332 |
Q |
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||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| ||||| |
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| T |
26068150 |
tgaatatatgtgctcaaactgaccacccaattctccatttcttaattaaccctccaaagcttcaaaaccctatataaccagaacaaaacaaaact |
26068056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 172 - 326
Target Start/End: Complemental strand, 26129085 - 26128928
Alignment:
| Q |
172 |
atattcccatcaa-gaatgtttgagaggctagtagttcaatcaaattcagtatcaaagtccaagtactgaatatctgtgctcaaactcaccacccaattc |
270 |
Q |
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||||||||||||| |||| ||||||||||| |||||||||| || | ||| | || | |||||||||||| |||||||||||| |||||||||||| |
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| T |
26129085 |
atattcccatcaaagaatatttgagaggcttttagttcaatcgaacttagtttagaaatagaagtactgaatacatgtgctcaaactgaccacccaattc |
26128986 |
T |
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| Q |
271 |
ttcatttcttaattaaccctcc--aaaacttcacaaccctatataaccagaactaaac |
326 |
Q |
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|||||||||||||||||||||| || ||||| |||||||||||||||||||||||| |
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| T |
26128985 |
ttcatttcttaattaaccctcctataagcttcagaaccctatataaccagaactaaac |
26128928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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