View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_high_30 (Length: 343)
Name: NF17841_high_30
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 39256223 - 39256539
Alignment:
| Q |
11 |
gaagaaatgaaagaattaccagcagaagagtatgaaaaattaagagtttttgaagaatcatttctcttgattataggacggtgaagggtagtagaaacag |
110 |
Q |
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| T |
39256223 |
gaagaaatgaaagaattaccagcagaagagtatgaaaaattaagagtttttgaagaatcatttctcttgattataggacggtgaagggtagtagaaacag |
39256322 |
T |
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| Q |
111 |
ttggtggaatctgttgcaaaggtgtagcgttgaaaatcattggttcagaaggttgaaattgtagggtttgtgatggtggtggttgtggttgtggtaaagg |
210 |
Q |
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| T |
39256323 |
ttggtggaatctgttgcaaaggtgtagcgttgaaaatcattggttcagaaggttgaaattgtagggtttgtgatggtggtggttgtggttgtggtaaagg |
39256422 |
T |
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| Q |
211 |
agcttttctgaaacgagcatgaccagttctagttttttcaagcagtgaaataacacgtttgaacttggaaacagctatgtctgcaacagctttgcaatct |
310 |
Q |
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| T |
39256423 |
agcttttctgaaacgagcatgaccagttctagttttttcaagcagtgaaataacacgtttgaacttggaaacagctatgtctgcaacagctttgcaatct |
39256522 |
T |
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| Q |
311 |
ctttctatatccatagt |
327 |
Q |
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||||||||||||||||| |
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| T |
39256523 |
ctttctatatccatagt |
39256539 |
T |
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