View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_high_31 (Length: 342)
Name: NF17841_high_31
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 39668987 - 39669292
Alignment:
| Q |
20 |
gataatatagtccccagttcattgcgttaacccatctccactcaacctcaactacgctcgcgttttacataccaatttaataaaataatttcatattttc |
119 |
Q |
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| T |
39668987 |
gataatacaatccccagttcattgcgttaacccatctccactcaacctcaaccacgctcacgttttacataccaatttaataaaataatttcatattttc |
39669086 |
T |
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| Q |
120 |
tctttcccactaatgtacatcgagacttgatctattatcacacagttgaacccactaaacacatgctaacagtacacagtctttaatatagagatgttgt |
219 |
Q |
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| T |
39669087 |
tctttcccactaatgtacatcgagacttgatctattatcacacagtggaacccactaaacacgtgctaacagtgcatagtctttaatatagagatgttgt |
39669186 |
T |
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| Q |
220 |
gcgggtatgataggttattcataacttcaattaagtttaacnnnnnnnnnnnnggagaagattgtaagccgccgttgtttcacaaaagagataacatgag |
319 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
39669187 |
gcgggtatgatagggtattcataacttcaattaagtttaacaaaaataaaaaaggagaagactataagccgccgttgtttcacaaaagagataacatgag |
39669286 |
T |
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| Q |
320 |
gagtgt |
325 |
Q |
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|||||| |
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| T |
39669287 |
gagtgt |
39669292 |
T |
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