View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17841_high_35 (Length: 297)

Name: NF17841_high_35
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17841_high_35
NF17841_high_35
[»] chr8 (1 HSPs)
chr8 (18-297)||(41325472-41325752)


Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 41325752 - 41325472
Alignment:
Q  18 aaactcatagacctcatgctcctgctaaaggtataaaccaagcatcaattattcatttatttagcaaaatgaataccactactgtccatcattttgaatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41325752 aaactcatagacctcatgctcctgctaaaggtataaaccaagcatcaattattcatttatttagcaaaatgaataccactactgtccatcattttgaatc 41325653  T
Q  118 ttcagaaattgcaaacttgaactgcaggttcagatgctcaagatcaagaccacttccgaagagagggcagataaaatcaaagatagtagccaatgtttgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41325652 ttcagaaattgcaaacttgaactgcaggttcagatgctcaagatcaagaccacttccgaagagagggcagataaaatcaaagatagtagccaatgtttgt 41325553  T
Q  218 catt-cattgtctctgttatttacagagcttcatcacttggcttgcattcttcaacaaaaaactaactaatcatttttgaa 297  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41325552 cattccattgtctctgttatttacagagcttcatcacttggcttgcattcttcaacaaaaaactaactagtcatttttgaa 41325472  T

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