View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_high_4 (Length: 669)
Name: NF17841_high_4
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 11 - 653
Target Start/End: Original strand, 14219779 - 14220421
Alignment:
| Q |
11 |
ataatactttcataaaagagaatattaggtggaaactgccagcaatgggatgggttcgcctaaatatgaatggagctactagaggtaatagtgtgtccga |
110 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14219779 |
ataatactttcataaaagagaacattaggtgaaaactgccagcaataggatgggttcgcctaaatatgaatggagctactagaggtaatagtgtgtccga |
14219878 |
T |
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| Q |
111 |
ttgtgtaagaattttttgtaatgatagaggtgagtgaatttgtggattttcaaagtgtcagggagtgtgtagtgtgtttgtagtagagttatgtggagnn |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| |
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| T |
14219879 |
ttgtgtaagaattttttgtaatgatagaggtgagtgaatttgtggattttcaaagctttagggagtgtgtagtgtgtttgtagcagagttatgtgga-at |
14219977 |
T |
|
| Q |
211 |
nnnnnnnaaaggtttaaagatagctatagagcgtggattttagaaaatggagcttaatttagatttaaaagtagtggtgtctaatcttaagtttgataaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14219978 |
tttttttaaaggtttaaagatagctatagagcgtggattttataaaatggagcttaatttagatttaaaagtagtggtgtctaattttaagtttgataaa |
14220077 |
T |
|
| Q |
311 |
ggtaattgaaatgttcgaatttgtcatacctttaaagaaacgattcttctacgaatgctctagataatcaacgattcttttatgaataatcagctattag |
410 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
14220078 |
gataattgaaatgttcgaatttgtcatacctttaaagaaacgattcttctacgaatgctctagataatcaacgattcttttatggataatcaattattag |
14220177 |
T |
|
| Q |
411 |
gtgaaatttatcatactttgattatctatgaacaacatcatatccagattagttcacatcatttagctgattatgttcatgtgacaacacctcacttaat |
510 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14220178 |
gtgaaatttgtcataccttgattatctatgaacaacatcatatccagattagttcacatcatttagctgattatgttcatgtgacaacacctcacttaat |
14220277 |
T |
|
| Q |
511 |
taactatagtgtattttctttt--gagccctcttctattnnnnnnnntactaataaaaatcttcaatatagccataaatctccacacgtgagcattgcaa |
608 |
Q |
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||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
14220278 |
taactatagtgtattttttttttcgagccctcttctatt-aaagaaatactaataaaaatcttcaatttagacataaatctccacacgtgagcattgcaa |
14220376 |
T |
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| Q |
609 |
agtcacgtggaggagttccctccagtccaccttgaaatcaaaaac |
653 |
Q |
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| T |
14220377 |
agtcacgtggaggagttccctccactccaccttgaaatcaaaaac |
14220421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 55 - 298
Target Start/End: Complemental strand, 32713517 - 32713278
Alignment:
| Q |
55 |
atgggatgggttcgcctaaatatgaatggagctactagaggtaatagtgtgtccgattgtgtaagaattttttgtaatgatagaggtgagtgaatttgtg |
154 |
Q |
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||||||||| |||| |||||||| |||||| ||||||||||||||| |||| | ||| | | ||||||| ||||||||||||||||||| | ||||| |
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| T |
32713517 |
atgggatggattcggctaaatattggtggagccactagaggtaatagtatgtctggttgcggaggaattttgcgtaatgatagaggtgagtggacttgtg |
32713418 |
T |
|
| Q |
155 |
gattttcaaagtgtcagggagtgtgtagtgtgtttgtagtagagttatgtggagnnnnnnnnnaaaggtttaaagatagctatagagcgtggattttaga |
254 |
Q |
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|||||||||||||| ||||||||||||| | ||||||| |||||| || ||| ||||||||||||||||||| |||| |||| ||| | | |
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| T |
32713417 |
gattttcaaagtgtatgggagtgtgtagtatatttgtagcagagttctggagag----ttttcaaaggtttaaagatagctagagagagtggctttcata |
32713322 |
T |
|
| Q |
255 |
aaatggagcttaatttagatttaaaagtagtggtgtctaatctt |
298 |
Q |
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|| |||||||| || |||||| || | ||||||||||||||||| |
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| T |
32713321 |
aattggagcttcatgtagattcaagactagtggtgtctaatctt |
32713278 |
T |
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