View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_high_42 (Length: 271)
Name: NF17841_high_42
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_high_42 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0474 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 24266503 - 24266752
Alignment:
| Q |
18 |
taccttgcatatgaatatctgagtccaatccaatctcactcaaatgaagttccttcaaagatatgaatcccccaagtgatggcaggatttcattagtcaa |
117 |
Q |
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| T |
24266503 |
taccttgtatatgaagatctgagtccaatccaatcacactcaaatggagttccttcaaagatttgaatccccttagtgaaggcaggatttcattactcaa |
24266602 |
T |
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| Q |
118 |
ctggtaaatgccacctatgtcaaggacctctagatgtagcaactttgatgaaattgtctccaaaactgactgaaaatctatggtacagtacaaatatgta |
217 |
Q |
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| T |
24266603 |
attgt---tgtaacttatgtcaaggacctccaaatgtagcaactttgatggaattgtctccaaaactgtctgaaaatctatggtacaatacaaatatgta |
24266699 |
T |
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| Q |
218 |
ttagtgttatgaaattaatttgctaaagcaattaaaaattattaattttatttt |
271 |
Q |
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| T |
24266700 |
ttagtgttatgaaattaatttgctaaagcaattaaaaattatt-attttatttt |
24266752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 24248766 - 24248870
Alignment:
| Q |
135 |
tgtcaaggacctctagatgtagcaactttgatgaaattgtctccaaaactgactgaaaatctatggtacagtacaaatatgtattagtgttatgaaatta |
234 |
Q |
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| T |
24248766 |
tgtcaaggacctccagatgcaacaactttgatgaaagtgtctccaaaactgtgtgaaaatctatggtacggtacaaatatgtattagtactattaaatta |
24248865 |
T |
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| Q |
235 |
atttg |
239 |
Q |
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| T |
24248866 |
atttg |
24248870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0474 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0474
Description:
Target: scaffold0474; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 9103 - 9286
Alignment:
| Q |
18 |
taccttgcatatgaatatctgagtccaatccaatctcactcaaatgaagttccttcaaagatatgaatcccccaagtgatggcaggatttcattagtcaa |
117 |
Q |
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| T |
9103 |
taccttgaaaatgaagatccgagtccaatccaatgccatccaaaactagttccttcaaagatgtaaatccccttagtgaaggcaggatttcattagtcaa |
9202 |
T |
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| Q |
118 |
ctggtaaatgccacctatgtcaaggacctctagatgtagcaactttgatgaaattgtctccaaaactgactgaaaatctatggtaca |
204 |
Q |
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| T |
9203 |
--gttttctg-cacttaagataagaacctccagatgcagtaacttagatgaaattgtctccaaaactgtctgaaaaactaaggtaca |
9286 |
T |
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