View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17841_high_46 (Length: 250)

Name: NF17841_high_46

Description: NF17841

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17841_high_46

[»] chr4 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 182; E-Value: 2e-98

Query Start/End: Original strand, 60 - 241

Target Start/End: Complemental strand, 43094062 - 43093881

Alignment:

Q	60	agaaggaagagaaaagcagtgatggaactcatcaattccctttgaggcctgaagctgaagattgttcattttatatgaagactgggagttgcaagtttgg	159	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43094062	agaaggaagagaaaagcagtgatggaactcatcaattccctttgaggcctgaagctgaagattgttcattttatatgaagactgggagttgcaagtttgg	43093963	T

Q	160	attcaactgcaaatttaatcaccccattaggaggaaaaaccaaaaccaggttatttattttctctttcttctcttgtatatt	241	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43093962	attcaactgcaaatttaatcaccccattaggaggaaaaaccaaaaccaggttatttattttctctttcttctcttgtatatt	43093881	T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 47; E-Value: 6e-18

Query Start/End: Original strand, 101 - 183

Target Start/End: Complemental strand, 34207461 - 34207379

Alignment:

Q	101	ttgaggcctgaagctgaagattgttcattttatatgaagactgggagttgcaagtttggattcaactgcaaatttaatcaccc	183	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	34207461	ttgaggcctgaagctgaagactgttctttttatctcaagactggaacttgcaaatttggattcaattgcaagtttaatcaccc	34207379	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]