View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17841_high_47 (Length: 250)
Name: NF17841_high_47
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_high_47 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 29 - 246
Target Start/End: Original strand, 12362873 - 12363101
Alignment:
| Q |
29 |
tctaatcatcatttatttaacgcaacataaccgaagtctacgaaatgaaagttattggaaaatcattttgagcagtggt-----------gtacacgatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12362873 |
tctaatcatcatttatttaacgcaacataacagaagtctacgaaatgaaagttattggaaaatcattttgagcagtggtatttgtattttgtacacgatt |
12362972 |
T |
|
| Q |
118 |
aatttttcaacacttatttaacaaaaatgatttcttttgaatgtgattaaatgactctaattcttcgttgttacaagatgcacaagtaataaacatctta |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12362973 |
aattttccaacacttatttaacaaaaatgatttcttttgaatgtgattaaatgactctaattcttcgttgttacaagatgcacaagtaataaacatgtta |
12363072 |
T |
|
| Q |
218 |
agcttgtgtttgatttgattcttctctct |
246 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
12363073 |
agcttgtgtttgatttgattcttttctct |
12363101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 29 - 246
Target Start/End: Original strand, 12379225 - 12379453
Alignment:
| Q |
29 |
tctaatcatcatttatttaacgcaacataaccgaagtctacgaaatgaaagttattggaaaatcattttgagcagtggt-----------gtacacgatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12379225 |
tctaatcatcatttatttaacgcaacataacagaagtctacgaaatgaaagttattggaaaatcattttgagcagtggtatttgtattttgtacacgatt |
12379324 |
T |
|
| Q |
118 |
aatttttcaacacttatttaacaaaaatgatttcttttgaatgtgattaaatgactctaattcttcgttgttacaagatgcacaagtaataaacatctta |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12379325 |
aattttccaacacttatttaacaaaaatgatttcttttgaatgtgattaaatgactctaattcttcgttgttacaagatgcacaagtaataaacatgtta |
12379424 |
T |
|
| Q |
218 |
agcttgtgtttgatttgattcttctctct |
246 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
12379425 |
agcttgtgtttgatttgattcttttctct |
12379453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 29 - 246
Target Start/End: Original strand, 12379846 - 12380074
Alignment:
| Q |
29 |
tctaatcatcatttatttaacgcaacataaccgaagtctacgaaatgaaagttattggaaaatcattttgagcagtggt-----------gtacacgatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
12379846 |
tctaatcatcatttatttaacgcaacataacagaagtctacgaaatgaaagttattggaaaatcattttgaacagtggtatttgtattttgtacacgatt |
12379945 |
T |
|
| Q |
118 |
aatttttcaacacttatttaacaaaaatgatttcttttgaatgtgattaaatgactctaattcttcgttgttacaagatgcacaagtaataaacatctta |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12379946 |
aattttccaacacttatttaacaaaaatgatttcttttaaatgtgattaaatgactctaattcttcgttgttacaagatgcacaagtaataaacatgtta |
12380045 |
T |
|
| Q |
218 |
agcttgtgtttgatttgattcttctctct |
246 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
12380046 |
agcttgtgtttgatttgattcttttctct |
12380074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 29 - 246
Target Start/End: Original strand, 12383913 - 12384141
Alignment:
| Q |
29 |
tctaatcatcatttatttaacgcaacataaccgaagtctacgaaatgaaagttattggaaaatcattttgagcagtggt-----------gtacacgatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
12383913 |
tctaatcatcatttatttaacgcaacataacagaagtctacgaaatgaaagttattggaaaatcattttgaacagtggtatttgtattttgtacacgatt |
12384012 |
T |
|
| Q |
118 |
aatttttcaacacttatttaacaaaaatgatttcttttgaatgtgattaaatgactctaattcttcgttgttacaagatgcacaagtaataaacatctta |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12384013 |
aattttccaacacttatttaacaaaaatgatttcttttaaatgtgattaaatgactctaattcttcgttgttacaagatgcacaagtaataaacatgtta |
12384112 |
T |
|
| Q |
218 |
agcttgtgtttgatttgattcttctctct |
246 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
12384113 |
agcttgtgtttgatttgattcttttctct |
12384141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University