View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17841_high_52 (Length: 243)

Name: NF17841_high_52
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17841_high_52
NF17841_high_52
[»] chr8 (1 HSPs)
chr8 (1-226)||(35167561-35167786)
[»] chr3 (2 HSPs)
chr3 (2-223)||(38068908-38069129)
chr3 (23-223)||(33130872-33131072)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 35167561 - 35167786
Alignment:
Q  1 tatgggattggatcttccttcaggtggacatctgactcatggttactatacttccggtgggaagaagatctcggccacttctatttactttgagagtttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35167561 tatgggattggatcttccttcaggtggacatctgactcatggttactatacttccggtgggaagaagatctcggccacttctatttactttgagagtttg 35167660  T
Q  101 ccgtataaggtgaattctaagactggttttattgattatgatcggttggaggagaaagcgttggattttaggcctaggttgattatctgtggtggtagtg 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  35167661 ccgtataaggtgaattctacgactggttttattgattatgatcggttggaggagaaagccttggattttaggcctaggttgattatctgtggtggcagtg 35167760  T
Q  201 cttaccctagggattgggattataaa 226  Q
    ||||||||||||||||||||||||||    
T  35167761 cttaccctagggattgggattataaa 35167786  T

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Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 38069129 - 38068908
Alignment:
Q  2 atgggattggatcttccttcaggtggacatctgactcatggttactatacttccggtgggaagaagatctcggccacttctatttactttgagagtttgc 101  Q
    |||||| ||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||    
T  38069129 atgggactggatctaccttctggtggacatttgactcatggttactatacttccggtgggaagaagatttcggctacttcgatttactttgagagcttgc 38069030  T
Q  102 cgtataaggtgaattctaagactggttttattgattatgatcggttggaggagaaagcgttggattttaggcctaggttgattatctgtggtggtagtgc 201  Q
    |||||||||||||||| |  || || ||||||||||||||| |||||||||||||||| ||||||||||| |||| ||||||||| |||||||| |||||    
T  38069029 cgtataaggtgaattcgaccacggggtttattgattatgataggttggaggagaaagctttggattttagacctaagttgattatttgtggtggaagtgc 38068930  T
Q  202 ttaccctagggattgggattat 223  Q
    ||| ||||| ||||||||||||    
T  38068929 ttatcctagagattgggattat 38068908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 33130872 - 33131072
Alignment:
Q  23 ggtggacatctgactcatggttactatacttccggtgggaagaagatctcggccacttctatttactttgagagtttgccgtataaggtgaattctaaga 122  Q
    ||||||||| ||| ||||||||| ||||||   |||||||||||| | |||||  ||||||| |  ||||||| |||||| |||||||||||| |   ||    
T  33130872 ggtggacatttgagtcatggttattatactcatggtgggaagaaggtttcggcggcttctatattttttgagactttgccttataaggtgaatccattga 33130971  T
Q  123 ctggttttattgattatgatcggttggaggagaaagcgttggattttaggcctaggttgattatctgtggtggtagtgcttaccctagggattgggatta 222  Q
    |||||| |||||||||||||  | | |||||||||||  |||||| |||||| | | |  |||| |||||||||||| |||| ||||| || ||||||||    
T  33130972 ctggttatattgattatgataaggttgaggagaaagcagtggattataggccgaagatacttatttgtggtggtagttcttatcctagagaatgggatta 33131071  T
Q  223 t 223  Q
    |    
T  33131072 t 33131072  T

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