View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17841_high_56 (Length: 229)

Name: NF17841_high_56
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17841_high_56
NF17841_high_56
[»] chr8 (4 HSPs)
chr8 (1-229)||(35592323-35592551)
chr8 (1-71)||(35581447-35581518)
chr8 (86-121)||(18808869-18808904)
chr8 (89-121)||(1876585-1876617)
[»] chr5 (3 HSPs)
chr5 (84-121)||(10410416-10410453)
chr5 (84-121)||(31672377-31672414)
chr5 (86-121)||(23023601-23023636)
[»] chr1 (8 HSPs)
chr1 (84-121)||(39150548-39150585)
chr1 (86-121)||(40570657-40570692)
chr1 (159-225)||(9590909-9590975)
chr1 (163-217)||(48947250-48947304)
chr1 (80-121)||(39912313-39912354)
chr1 (85-121)||(34445636-34445672)
chr1 (81-121)||(39914708-39914748)
chr1 (86-145)||(45584507-45584567)
[»] chr7 (5 HSPs)
chr7 (85-121)||(27123241-27123277)
chr7 (84-117)||(7653552-7653585)
chr7 (80-121)||(34299846-34299887)
chr7 (85-121)||(27870395-27870431)
chr7 (85-121)||(28770444-28770480)
[»] chr4 (6 HSPs)
chr4 (81-121)||(45900252-45900292)
chr4 (86-121)||(8297839-8297874)
chr4 (84-145)||(44646603-44646665)
chr4 (86-145)||(6316884-6316944)
chr4 (85-121)||(38945123-38945159)
chr4 (79-119)||(41981150-41981189)
[»] chr3 (3 HSPs)
chr3 (86-121)||(17517521-17517556)
chr3 (88-121)||(52308986-52309019)
chr3 (86-145)||(34758897-34758957)
[»] chr2 (1 HSPs)
chr2 (84-121)||(2769349-2769385)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 35592323 - 35592551
Alignment:
Q  1 caaataatatggttttgtggtttaaatatgtttgcagtccacaaaaaatcacagatttttaagattagttcctgtaagtaaaaatgggtcttgttaacga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  35592323 caaataatatggttttgtggtttaaatatgtttgcagtccacaaaaaatcacagatttttaagattagttcctgtaagaaaaaatgggtcctgttaacga 35592422  T
Q  101 gtgcacccggggcactctttacgatttaaaaataagaaattatttcgtnnnnnnntcaaatatttcaatttccaaggcaatgatcagacaaatttccata 200  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  35592423 gtgcacccgggacactctttaggatttaaaaataagaaattatttcgtaaaaaagtcaaatatttcaatttccaaggcaatgatcagacaaatttccata 35592522  T
Q  201 aaatgttaccatttaaaagttttaaaagt 229  Q
    ||| |||||||||||||| ||||||||||    
T  35592523 aaaagttaccatttaaaaattttaaaagt 35592551  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 35581447 - 35581518
Alignment:
Q  1 caaataatatggttttgtggtttaaatatgtttgcagtccacaaaaaatcacagat-ttttaagattagttc 71  Q
    |||||||||||||||| ||||||||| |||||||||||||  | |||||||||||| ||||||| |||||||    
T  35581447 caaataatatggttttttggtttaaacatgtttgcagtccttataaaatcacagatcttttaagtttagttc 35581518  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 18808904 - 18808869
Alignment:
Q  86 gggtcttgttaacgagtgcacccggggcactcttta 121  Q
    ||||||||||||||||||| ||||||||||||||||    
T  18808904 gggtcttgttaacgagtgctcccggggcactcttta 18808869  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 1876617 - 1876585
Alignment:
Q  89 tcttgttaacgagtgcacccggggcactcttta 121  Q
    |||||||||||||||| ||||||||||||||||    
T  1876617 tcttgttaacgagtgcccccggggcactcttta 1876585  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 10410416 - 10410453
Alignment:
Q  84 atgggtcttgttaacgagtgcacccggggcactcttta 121  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  10410416 atgggtcttgttaacgagtgcccccggggcactcttta 10410453  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 31672377 - 31672414
Alignment:
Q  84 atgggtcttgttaacgagtgcacccggggcactcttta 121  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  31672377 atgggtcttgttaacgagtgcccccggggcactcttta 31672414  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 23023601 - 23023636
Alignment:
Q  86 gggtcttgttaacgagtgcacccggggcactcttta 121  Q
    ||||||||||||||||||| ||||||||||||||||    
T  23023601 gggtcttgttaacgagtgcccccggggcactcttta 23023636  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 39150548 - 39150585
Alignment:
Q  84 atgggtcttgttaacgagtgcacccggggcactcttta 121  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  39150548 atgggtcttgttaacgagtgcccccggggcactcttta 39150585  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 40570657 - 40570692
Alignment:
Q  86 gggtcttgttaacgagtgcacccggggcactcttta 121  Q
    ||||||||||||||||||| ||||||||||||||||    
T  40570657 gggtcttgttaacgagtgcccccggggcactcttta 40570692  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 9590909 - 9590975
Alignment:
Q  159 aatatttcaatttccaaggcaatgatcagacaaatttccataaaatgttaccatttaaaagttttaa 225  Q
    |||||||| |||| ||| | | |||| | ||| |||| |||||||||||||||||||||||||||||    
T  9590909 aatatttcgatttacaatgtattgattacacacattttcataaaatgttaccatttaaaagttttaa 9590975  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 48947250 - 48947304
Alignment:
Q  163 tttcaatttccaaggcaatgatcagacaaatttccataaaatgttaccatttaaa 217  Q
    ||||||||||||| ||| |||| | |||||||| ||||||| |||||||||||||    
T  48947250 tttcaatttccaatgcactgattacacaaattttcataaaaagttaccatttaaa 48947304  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 39912354 - 39912313
Alignment:
Q  80 aaaaatgggtcttgttaacgagtgcacccggggcactcttta 121  Q
    ||||| ||||||||||||||||||| |||||| |||||||||    
T  39912354 aaaaaagggtcttgttaacgagtgcccccgggacactcttta 39912313  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 34445636 - 34445672
Alignment:
Q  85 tgggtcttgttaacgagtgcacccggggcactcttta 121  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  34445636 tgggtcttgttaacgagtgcccccggagcactcttta 34445672  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 39914748 - 39914708
Alignment:
Q  81 aaaatgggtcttgttaacgagtgcacccggggcactcttta 121  Q
    ||||||||||||||||||||||||  ||||| |||||||||    
T  39914748 aaaatgggtcttgttaacgagtgcttccgggacactcttta 39914708  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 45584507 - 45584567
Alignment:
Q  86 gggtcttgttaacgagtgcacccggggcactcttt-acgatttaaaaataagaaattattt 145  Q
    ||||||||||||||| ||| ||||||||||||||| | ||||  |||| ||||||||||||    
T  45584507 gggtcttgttaacgaatgcccccggggcactctttaaggattccaaaagaagaaattattt 45584567  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 27123241 - 27123277
Alignment:
Q  85 tgggtcttgttaacgagtgcacccggggcactcttta 121  Q
    |||||||||||||||||||| ||||||||||||||||    
T  27123241 tgggtcttgttaacgagtgcccccggggcactcttta 27123277  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 7653552 - 7653585
Alignment:
Q  84 atgggtcttgttaacgagtgcacccggggcactc 117  Q
    ||||||||||||||||||||| ||||||||||||    
T  7653552 atgggtcttgttaacgagtgctcccggggcactc 7653585  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 34299887 - 34299846
Alignment:
Q  80 aaaaatgggtcttgttaacgagtgcacccggggcactcttta 121  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||    
T  34299887 aaaaaagggtcttgttaacgagtgcccccggggcacttttta 34299846  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 27870395 - 27870431
Alignment:
Q  85 tgggtcttgttaacgagtgcacccggggcactcttta 121  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  27870395 tgggtcttgttaacgagtgctcccggagcactcttta 27870431  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 28770444 - 28770480
Alignment:
Q  85 tgggtcttgttaacgagtgcacccggggcactcttta 121  Q
    ||||||||||||||||||||  |||||||||||||||    
T  28770444 tgggtcttgttaacgagtgcctccggggcactcttta 28770480  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 45900292 - 45900252
Alignment:
Q  81 aaaatgggtcttgttaacgagtgcacccggggcactcttta 121  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  45900292 aaaatgggtcttgttaacgagtgcccccgaggcactcttta 45900252  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 8297839 - 8297874
Alignment:
Q  86 gggtcttgttaacgagtgcacccggggcactcttta 121  Q
    ||||||||||||||||||| ||||||||||||||||    
T  8297839 gggtcttgttaacgagtgcccccggggcactcttta 8297874  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 44646665 - 44646603
Alignment:
Q  84 atgggtcttgttaacgagtgcacccggggcactcttt-acgatttaaaaataagaaattattt 145  Q
    ||||||||||||||||||||| ||||||||| ||||| | ||||| |||| |||||| |||||    
T  44646665 atgggtcttgttaacgagtgcccccggggcattctttaaggatttcaaaagaagaaactattt 44646603  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 6316944 - 6316884
Alignment:
Q  86 gggtcttgttaacgagtgcacccggggcactcttt-acgatttaaaaataagaaattattt 145  Q
    |||||||||||||||||||  |||||||||||||| | ||||| |||| ||||||| ||||    
T  6316944 gggtcttgttaacgagtgcctccggggcactctttaaagatttcaaaagaagaaataattt 6316884  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 38945159 - 38945123
Alignment:
Q  85 tgggtcttgttaacgagtgcacccggggcactcttta 121  Q
    |||||||||||||||||||| |||| |||||||||||    
T  38945159 tgggtcttgttaacgagtgcccccgcggcactcttta 38945123  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 41981189 - 41981150
Alignment:
Q  79 taaaaatgggtcttgttaacgagtgcacccggggcactctt 119  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  41981189 taaaattgggtcttgttaacgagtgc-cccggggcactctt 41981150  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 17517521 - 17517556
Alignment:
Q  86 gggtcttgttaacgagtgcacccggggcactcttta 121  Q
    ||||||||||||||||||| ||||||||||||||||    
T  17517521 gggtcttgttaacgagtgctcccggggcactcttta 17517556  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 121
Target Start/End: Original strand, 52308986 - 52309019
Alignment:
Q  88 gtcttgttaacgagtgcacccggggcactcttta 121  Q
    ||||||||||||||||| ||||||||||||||||    
T  52308986 gtcttgttaacgagtgcccccggggcactcttta 52309019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 34758897 - 34758957
Alignment:
Q  86 gggtcttgttaacgagtgcacccggggcactcttt-acgatttaaaaataagaaattattt 145  Q
    |||||||||||||||||||  |||||||||||||| | |||| ||||| ||| ||||||||    
T  34758897 gggtcttgttaacgagtgcctccggggcactctttaaggattcaaaaagaagtaattattt 34758957  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 2769385 - 2769349
Alignment:
Q  84 atgggtcttgttaacgagtgcacccggggcactcttta 121  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  2769385 atgggtcttgttaacgagtgc-cccggggcactcttta 2769349  T

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