View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_high_58 (Length: 220)
Name: NF17841_high_58
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_high_58 |
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Alignment Details
Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 32271680 - 32271742
Alignment:
| Q |
1 |
tatttttaatcagaatggagtatagtttagcatggatttggattttaaaatgaggtcattagt |
63 |
Q |
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| T |
32271680 |
tatttataatgagaatggagtatagtttagcatggatttggattttaaaatgaggtcattagt |
32271742 |
T |
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Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 32266433 - 32266493
Alignment:
| Q |
142 |
tccaaggacaataatgcaaccaagcatatactcccccattattaatgaatttatactccct |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
32266433 |
tccaaggacaataatgcaaccaagcatatactcccccattattaactaatttatcctccct |
32266493 |
T |
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