View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_high_6 (Length: 633)
Name: NF17841_high_6
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 1 - 617
Target Start/End: Original strand, 9167875 - 9168491
Alignment:
| Q |
1 |
agtaagtaatattcttcaatatgaaaagatgaactctacttaccacaactgatatcaattcccaatggagttgtgcaatattcaactgtacatacaagac |
100 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9167875 |
agtaagtaatattcttcaaaatgaaaagatgaagtctacttaccacaactgatatcaattcccaatggagttgtgcaatagtcaactgtacatacaagac |
9167974 |
T |
|
| Q |
101 |
ctccgctgtcgtaattcatgtagcagttttgttggttcatgtcacaagaatcttcacaaggttgtcttatccacgaaagttcaaatccatagcttagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9167975 |
ctccgctgtcgtaattcatgtagcagttttgttggttcatgtcacaagaatcttcacaaggttgtcttatccacgaaagttcaaatccatagcttagaaa |
9168074 |
T |
|
| Q |
201 |
tcgatgaatttccacatatgaaaaatgttgaaaatctttcttggagataaaagctaaagctgatgacatagtaacaagcttcacgcggcaaccaacattc |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9168075 |
tcgatgaatttccacatatgaaaaaggttgaaaatctttcttggagataaaagctaaagctgatgacatagtaacaagcttcacgcggcaaccaacattc |
9168174 |
T |
|
| Q |
301 |
aatttaacaactctaaagtccccagcaattgcataaatatagctgttattttcggagttcagtctacacgtagatgtatccaaatacataggatcgttct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
9168175 |
aatttaacaactctaaagtccccagcaattgcataaatatagctgttattttcggagttcagtctacacgtagatgtatccacatacataggatcgttct |
9168274 |
T |
|
| Q |
401 |
tcagttgcttgttacagttcaagtatactacatgctccggcctagaataatcatggaatgcgtatggatcccccttgtactcgtaatgactgtaataact |
500 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9168275 |
tcagttgcttgctacagttcaagtatactacatgctccggcctagaataatcatggaatgcgtatggatcccccttgtactcgtaatgactgtaataact |
9168374 |
T |
|
| Q |
501 |
tgtgaaattggttgcggttaagaaatagcgaggaatggtgcaatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgatt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9168375 |
tgtgaaattggttgcggttaagaaatagcgaggaatggtgcaatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgatt |
9168474 |
T |
|
| Q |
601 |
gatttcacatagtattt |
617 |
Q |
| |
|
||||||||||||||||| |
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| T |
9168475 |
gatttcacatagtattt |
9168491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 21 - 617
Target Start/End: Complemental strand, 9307502 - 9306903
Alignment:
| Q |
21 |
atgaaaagatgaactctacttaccacaactgatatcaattcccaatggagttgtgcaatattcaactgtacatacaagacctccgctgtcgtaattcatg |
120 |
Q |
| |
|
||||||||||||| |||||||||||||| | || | || ||||||||||||| |||||| ||| | |||||||||| |||| || ||||| |||| |
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|
| T |
9307502 |
atgaaaagatgaaatctacttaccacaatttatttgaagtcccaatggagttatgcaatcatcattttgacatacaagatatccggcgttgtaatccatg |
9307403 |
T |
|
| Q |
121 |
tagcagttttgttggttcatgtcacaagaatcttcacaaggttgtcttatccacgaaagttcaaatccatagcttagaaatcgatgaatttccacatatg |
220 |
Q |
| |
|
|||||||||| | ||| |||||||| |||||||||| |||| ||||||||||||||||||||||||||||||| || |||||||||| || | |
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| T |
9307402 |
aagcagttttgattgttattgtcacaatgatcttcacaaccacgtctcatccacgaaagttcaaatccatagcttagaagtctatgaatttccttgtacg |
9307303 |
T |
|
| Q |
221 |
aaaaatgttgaaaatctttcttggagataaaagctaaagctgatgacatagtaacaagcttcacgcggcaaccaacattcaatttaacaactctaaagtc |
320 |
Q |
| |
|
|||| |||| | | || ||| |||||| ||||||||| |||||||||| |||||| |||||||||||||| |||| | |||| |||||||| |
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|
| T |
9307302 |
gaaaaggttgtcttccctcggtgacgattaaagctggagctgatgatatagtaacaatcttcacacggcaaccaacatttaattcaccaacactaaagtc |
9307203 |
T |
|
| Q |
321 |
cccagcaattgcataaatatagctgttattttcggagttcagtctacacgtagatgtatccaaatacataggatcgttcttcagttgcttgttacagttc |
420 |
Q |
| |
|
|| | |||||||||||| ||||||||||||| | ||||| | |||||||| ||||||||||| |||| |||||||||||||| ||| ||| |||||||| |
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|
| T |
9307202 |
cctatcaattgcataaacatagctgttatttgcagagttgattctacacggagatgtatccacgtacagaggatcgttcttcacttgattgctacagttc |
9307103 |
T |
|
| Q |
421 |
aagtatactacatgctccggcctagaataa---tcatggaatgcgtatggatcccccttgtactcgtaatgactgtaataacttgtgaaattggttgcgg |
517 |
Q |
| |
|
||||||| ||| ||||| | ||| | | | | ||| | ||||||||||| | ||| | |||| |||| ||||||||||||||| ||||| |
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|
| T |
9307102 |
aagtatattacgtgctcaaccagagattgaccgttacccaattcatatggatccccgtggtaattataat---cgtaagaacttgtgaaattggctgcgg |
9307006 |
T |
|
| Q |
518 |
ttaagaaatagcgaggaat---ggtgcaatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagta |
614 |
Q |
| |
|
|||||||||||||||| || || |||||||||||||| |||||| ||||||||||||| |||| ||||||| ||||||||||||||||||||||||| |
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|
| T |
9307005 |
ttaagaaatagcgaggcatggaggagcaatcaccttcttgaattccaagatcaactactctcattgagtagtttctgtagttgattgatttcacatagta |
9306906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 489 - 610
Target Start/End: Complemental strand, 9475491 - 9475367
Alignment:
| Q |
489 |
actgtaataacttgtgaaattggttgcggttaagaaatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtag |
585 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| |||||||||| | |||||| | |||| |||||||||||||||| ||||||||||||| |
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| T |
9475491 |
actgtaataacttgtgaaattggatttggttaagaaataacgaggaatggagaagcaatcatcctcttgaattccaggatcaactagtctgattgtgtag |
9475392 |
T |
|
| Q |
586 |
tttttgtagttgattgatttcacat |
610 |
Q |
| |
|
|| | |||||||||||| ||||||| |
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|
| T |
9475391 |
ttatcgtagttgattgacttcacat |
9475367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 540 - 617
Target Start/End: Original strand, 8924746 - 8924823
Alignment:
| Q |
540 |
gcaatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtattt |
617 |
Q |
| |
|
||||||||| ||||| ||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
8924746 |
gcaatcaccctcttcaattccgggatcaactattctgattgtgtagttattgtagttgattgatttcacatagtattt |
8924823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 519 - 617
Target Start/End: Original strand, 8936363 - 8936464
Alignment:
| Q |
519 |
taagaaatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtat |
615 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||| ||||| ||||| |||||||||| | ||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
8936363 |
taagtaatagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtat |
8936462 |
T |
|
| Q |
616 |
tt |
617 |
Q |
| |
|
|| |
|
|
| T |
8936463 |
tt |
8936464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 524 - 617
Target Start/End: Original strand, 8959889 - 8959985
Alignment:
| Q |
524 |
aatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtattt |
617 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||| ||||| |||||||||| | ||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
8959889 |
aatagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtattt |
8959985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 617
Target Start/End: Original strand, 8945881 - 8945958
Alignment:
| Q |
540 |
gcaatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtattt |
617 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | ||||||||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
8945881 |
gcaatcaccttcttttattccaggatcaactaaccgaattgtgtagttattgtagttgattgattttacatggtattt |
8945958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 305
Target Start/End: Complemental strand, 9475842 - 9475678
Alignment:
| Q |
141 |
gtcacaagaatcttcacaaggttgtcttatccacgaaagttcaaatccatagcttagaaatcgatgaatttccacatatgaaaaatgttgaaaatctttc |
240 |
Q |
| |
|
||||||| |||||||||||| || | |||||||||| |||||||||||||||||| | || ||||||||| | || |||||||| || ||| || |
|
|
| T |
9475842 |
gtcacaaaaatcttcacaagcacgtgtaatccacgaaatttcaaatccatagcttagcattccgtgaatttccgcgtaagaaaaatggtgttgatcactc |
9475743 |
T |
|
| Q |
241 |
ttggagataaaagctaaagctgatgacatagtaacaagcttcacgcggcaaccaacattcaattt |
305 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||||| ||||| ||| ||| ||||| |
|
|
| T |
9475742 |
cgagagataaaagcaggagctgctgacatagcaacaagcttcacgtggcaatcaatatttaattt |
9475678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 542 - 617
Target Start/End: Original strand, 9335524 - 9335599
Alignment:
| Q |
542 |
aatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtattt |
617 |
Q |
| |
|
||||||||||||| ||||| |||||||||| | |||||||||||| ||||||||||| | |||||||||||| |
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|
| T |
9335524 |
aatcaccttcttcaattcctggatcaactaaccgaattgtgtagtttatgtagttgatttcctgcacatagtattt |
9335599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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