View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17841_high_7 (Length: 601)
Name: NF17841_high_7
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_high_7 |
 | |
|
| [»] scaffold0042 (1 HSPs) |
| | |
|
| [»] scaffold0502 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 468; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Original strand, 47281951 - 47282540
Alignment:
| Q |
1 |
tctgacatagatgatcaagaaggtatgcgattcaatagtcctgtcatatttatctatcgccacaaaccatcaatggtagagaaagaccctcttaaggtac |
100 |
Q |
| |
|
||||||||||||||||||||| || |||| ||||||| ||| |||||||||||||||| ||| |||||||||||||| ||||||||||| ||||||| | |
|
|
| T |
47281951 |
tctgacatagatgatcaagaatgtttgcgtttcaatatgcctatcatatttatctatcgtcacgaaccatcaatggtaaagaaagaccctgttaaggttc |
47282050 |
T |
|
| Q |
101 |
ttagacatgcactctcacgaacacttgtgtattactatccacttgcgggaagaattagggagggagctgggcgcaagttgatggtggattgtactggt-- |
198 |
Q |
| |
|
||| | |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||| |
|
|
| T |
47282051 |
ttaaatgtgcactctcaaaaacacttgtttattactatccacttgcgggaagaattagggagggagctagggacaaattgatggtggattgtactggtgg |
47282150 |
T |
|
| Q |
199 |
-gaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgtttccaagaactcatatat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
47282151 |
tgaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgcttccaagaactcatatat |
47282250 |
T |
|
| Q |
298 |
gatgttccaagcacgaaacaaatcattgatcatcctattctgctcatacaggtccaatcatgttaattcttcatccttaatgttttgcaggcctcgccac |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47282251 |
gatgttccaagcacgaaacaaatcattgatcatcctattctgctcatacaggtccaatcatgttaattcttcatccttaatgttttgcaggcctcgccac |
47282350 |
T |
|
| Q |
398 |
agttttgacttaatcacca-ttttgtccttaaagttgtgactcagacagtattacataccttgctttaaaattttaattttttgttgatttcagatatta |
496 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47282351 |
acttttgacttaatcaccatttttgtccttaaagttgtgactcagacagtattacataccttgctttaaaattttaattttttgttgatttcagatatta |
47282450 |
T |
|
| Q |
497 |
tattgttattgcctacagttttggagcctaggttaatttttgaaccaatgtttttatccaaaaaatagtagatggaaggcatgacaattg |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47282451 |
tattgttattgcctacagttttggagcctaggttaattgttcaaccaatgtttttatccaaaaaatagtagatggaaggcatgacaattg |
47282540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 47296544 - 47296239
Alignment:
| Q |
1 |
tctgacatagatgatcaagaaggtatgcgattcaatagtcctgtcatatttatctatcgccacaaaccatcaatggtagagaaagaccctcttaaggtac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
47296544 |
tctgacatagatgatcaagaaggtatgcgattcaatagtcctgtcatatttatctatcgccacaaaccatcaatggtagagaaagaccctcttaaggtgc |
47296445 |
T |
|
| Q |
101 |
ttagacatgcactctcacgaacacttgtgtattactatccacttgcgggaagaattagggagggagctgggcgcaagttgatggtggattgtactggtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47296444 |
ttagacatgcactctcacgaacacttgtgtattactatccacttgcgggaagaattagggagggagctgggcgcaagttgatggtggattgtactggtga |
47296345 |
T |
|
| Q |
201 |
aggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgtttccaagaactcatatatgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||| ||||||||||| |||||| ||||| |||||||| |
|
|
| T |
47296344 |
aggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgccctgcatcctccattcccttgcttccaacaactcctatatgat |
47296245 |
T |
|
| Q |
301 |
gttcca |
306 |
Q |
| |
|
|||||| |
|
|
| T |
47296244 |
gttcca |
47296239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 47275213 - 47275604
Alignment:
| Q |
1 |
tctgacatagatgatcaagaaggtatgcgattcaatagtcctgtcatatttatctatcgccacaaaccatcaatggtagagaaagaccctcttaaggtac |
100 |
Q |
| |
|
||||||||||||||||||||| | |||| ||||||| ||| |||||||||||||||| || ||||||||||| |||||||||||||| |||||| | |
|
|
| T |
47275213 |
tctgacatagatgatcaagaatgcttgcgtttcaatatgcctatcatatttatctatcgtcatgaaccatcaatgatagagaaagaccctgctaaggttc |
47275312 |
T |
|
| Q |
101 |
ttagacatgcactctcacgaacacttgtgtattactatccacttgcgggaagaattagggagggagctgggcgcaagttgatggtggattgtactggtga |
200 |
Q |
| |
|
||| || ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| |
|
|
| T |
47275313 |
ttaaacgtgcactctcacaaacacttgtttattattatccacttgcgggaagaattagggagggagctagggacaagttgatggtggattgtaccggtga |
47275412 |
T |
|
| Q |
201 |
aggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgtttccaagaactcatatatgat |
300 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||| |||||| |||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
47275413 |
gggagtcatgttcattgaagctgaaactgatgttacacttgatgaatttggtgatgcactgcatcccccattcccttgcttccaagaactcatatacgat |
47275512 |
T |
|
| Q |
301 |
gttccaagcacgaaacaaatcattgatcatcctattctgctcatacaggtccaatcatgttaattc-ttcatccttaatgttttgcaggcct |
391 |
Q |
| |
|
|||||| |||| || ||||| ||||||||||| |||||||| ||||||||||||| |||||||||| |||| |||||||||||||||||||| |
|
|
| T |
47275513 |
gttccaggcacaaaccaaattattgatcatcccattctgcttatacaggtccaattatgttaattctttcaaccttaatgttttgcaggcct |
47275604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 47301136 - 47300772
Alignment:
| Q |
1 |
tctgacatagatgatcaagaaggtatgcgattcaatagtcctgtcatatttatctatcgccacaaaccatcaatggtagagaaagaccctcttaaggtac |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||| |||| | || |||||||||| ||| |||||||||||| ||||||||||||| ||||||| | |
|
|
| T |
47301136 |
tctgacatagatgatcaagaaggtttgcgcttcaatattcctatgatctttatctatcatcacgaaccatcaatggcagagaaagaccctgttaaggttc |
47301037 |
T |
|
| Q |
101 |
ttagacatgcactctcacgaacacttgtgtattactatccacttgcgggaagaattagggagggagctgggcgcaagttgatggtggattgtactggtga |
200 |
Q |
| |
|
| |||||||||||||||| | ||||||| |||||||||||| |||||||||| ||||||||||||||| | |||||||||||||||||||||||||| || |
|
|
| T |
47301036 |
tgagacatgcactctcacaagcacttgtttattactatccatttgcgggaaggattagggagggagctagtcgcaagttgatggtggattgtactggcga |
47300937 |
T |
|
| Q |
201 |
aggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgtttccaagaactcatatatgat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||| ||||||||||| ||||| ||||| |||||||| |
|
|
| T |
47300936 |
gggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgccctgcatcctccattcccttgcttccatcaactcctatatgat |
47300837 |
T |
|
| Q |
301 |
gttccaagcacgaaacaaatcattgatcatcctattctgctcatacaggtccaatcatgttaatt |
365 |
Q |
| |
|
|||| | || || ||||||| || || | ||| |||| ||||||||||| |||| || |||||| |
|
|
| T |
47300836 |
gttcgaggctcggaacaaattatggaccgtcccattcgactcatacaggttcaattatattaatt |
47300772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 47255601 - 47255906
Alignment:
| Q |
1 |
tctgacatagatgatcaagaaggtatgcgattcaatagtcctgtcatatttatctatcgccacaaaccatcaatggtagagaaagaccctcttaaggtac |
100 |
Q |
| |
|
|||||||| |||||||||||||| | || |||||| ||||||||||||| ||| ||| || |||| |||||| ||||||||||||| ||||||| | |
|
|
| T |
47255601 |
tctgacattgatgatcaagaaggccttcgtttcaatcttcctgtcatatttgtctttcgtcatgaaccttcaatgaaagagaaagaccctgttaaggttc |
47255700 |
T |
|
| Q |
101 |
ttagacatgcactctcacgaacacttgtgtattactatccacttgcgggaagaattagggagggagctgggcgcaagttgatggtggattgtactggtga |
200 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||||||||| || || || |
|
|
| T |
47255701 |
ttaaacatgcactctcacgaacacttgtttattactatccaggtgcaggaaggattagggagggtgctgggcgcaagttgatggtggattgcaccgggga |
47255800 |
T |
|
| Q |
201 |
aggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgtttccaagaactcatatatgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| || || ||||| ||||| ||||||||| | ||| |||| |
|
|
| T |
47255801 |
gggtgtcatgttcattgaagctgaagctgatataacacttgatcaatttggtgatgctctgcaacctccatttccttgcttccaagaaattctatgtgat |
47255900 |
T |
|
| Q |
301 |
gttcca |
306 |
Q |
| |
|
|||||| |
|
|
| T |
47255901 |
gttcca |
47255906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 47264645 - 47264994
Alignment:
| Q |
1 |
tctgacatagatgatcaagaaggtatgcgattcaatagtcctgtcatatttatctatcgccacaaaccatcaatggtagagaaagaccctcttaaggtac |
100 |
Q |
| |
|
|||||||||||||| |||||||| | || ||||||| |||| | || ||||||||||| || |||| |||||| ||| ||||| ||| |||| || | |
|
|
| T |
47264645 |
tctgacatagatgaccaagaaggcttacgtttcaatattcctatgatgtttatctatcgtcatgaaccgtcaatgaaagaaaaagatcctgttaaagttc |
47264744 |
T |
|
| Q |
101 |
ttagacatgcactctcacgaacacttgtgtattactatccacttgcgggaagaattagggagggagctgggcgcaagttgatggtggattgtactggtga |
200 |
Q |
| |
|
|||||||||||||||||| | ||||||| |||||||||||| |||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||||| || |
|
|
| T |
47264745 |
ttagacatgcactctcacaagcacttgtttattactatccatttgcaggaaggattagggagggtgctggacgcaagttgatggtcgattgtactggcga |
47264844 |
T |
|
| Q |
201 |
aggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgtttccaagaactcatatatgat |
300 |
Q |
| |
|
|| || |||||| |||||||||||||||||||||| ||| ||||||| ||||| ||| | ||||||||| |||| || ||| ||||||| |||| ||| |
|
|
| T |
47264845 |
gggagttatgttcgttgaagctgaagctgatgtaacccttgatgaattcggtgacgctttgcatcccccactcccatgcttcgaagaacttctatacgat |
47264944 |
T |
|
| Q |
301 |
gttccaagcacgaaacaaatcattgatcatcctattctgctcatacaggt |
350 |
Q |
| |
|
|||||| | || ||| ||| ||||| | ||| |||| ||||||||||| |
|
|
| T |
47264945 |
gttccaggatcggaactaattattgaccgtcccattcgactcatacaggt |
47264994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 170 - 306
Target Start/End: Original strand, 47240818 - 47240954
Alignment:
| Q |
170 |
ggcgcaagttgatggtggattgtactggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatccccc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||| || |
|
|
| T |
47240818 |
ggcgcaagttgatggtggattgtactggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctcc |
47240917 |
T |
|
| Q |
270 |
attcccttgtttccaagaactcatatatgatgttcca |
306 |
Q |
| |
|
||||||||| |||||| ||||| |||| ||||||||| |
|
|
| T |
47240918 |
attcccttgcttccaacaactcttatacgatgttcca |
47240954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 47240779 - 47240814
Alignment:
| Q |
1 |
tctgacatagatgatcaagaaggtatgcgattcaat |
36 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
47240779 |
tctgacatagatgatcaagaaggtttgcgattcaat |
47240814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 32729314 - 32729668
Alignment:
| Q |
1 |
tctgacatagatgatcaagaaggtatgcgattcaatagtcctgtcatatttatctatcgccacaaaccatcaatggtagagaaagaccctcttaaggtac |
100 |
Q |
| |
|
||||| |||||||||||||||||| |||| |||||| ||||||||||||||||||||| | | |||||||||||| ||||||||||||| ||||||| | |
|
|
| T |
32729314 |
tctgatatagatgatcaagaaggtttgcgtttcaatgttcctgtcatatttatctatcgtcgcgaaccatcaatggcagagaaagaccctattaaggttc |
32729413 |
T |
|
| Q |
101 |
ttagacatgcactctcacgaacacttgtgtattactatccacttgcgggaagaattagggagggagctgggcgcaagttgatggtggattgtactggtga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32729414 |
ttagacatgcactctcacgaacacttgtgtattactacccatttgcgggaaggattagggagggtgctaggcgcaagttgatggtggattgtactggtga |
32729513 |
T |
|
| Q |
201 |
aggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgtttccaagaactcatatatgat |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| || |||||||||||||||| ||||| ||||||||||| |||||| ||||| |||| ||| |
|
|
| T |
32729514 |
gggtgtcgtgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcccttgcttccaacaactcttatacgat |
32729613 |
T |
|
| Q |
301 |
gttccaagcacgaaacaaatcattgatcatcctattctgctcatacaggtccaat |
355 |
Q |
| |
|
|||||| || | |||| || ||||| | ||| |||| |||||||||||||||| |
|
|
| T |
32729614 |
gttccaggctcagaacatattattgaccgtcccattcgactcatacaggtccaat |
32729668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 20511651 - 20511925
Alignment:
| Q |
1 |
tctgacatagatgatcaagaaggtatgcgattcaatagtcctgtcatatttatctatcgccacaaaccatcaatggtagagaaagaccctcttaaggtac |
100 |
Q |
| |
|
|||||||||||||||||| || || | || | ||||| || | |||| |||||||||| || |||||| |||| | ||||||||||| ||||||| | |
|
|
| T |
20511651 |
tctgacatagatgatcaaaaaagtctccgttgcaatattcttctcatctttatctatcatcatgaaccattaatgacaaagaaagaccctgttaaggttc |
20511750 |
T |
|
| Q |
101 |
ttagacatgcactctcacgaacacttgtgtattactatccacttgcgggaagaattagggagggagctgggcgcaagttgatggtggattgtactggtga |
200 |
Q |
| |
|
|||||||||||||||||| | ||||||| ||||||||||| |||||||||| |||||||| |||| ||| | ||||| |||||||||||||||||||| |
|
|
| T |
20511751 |
ttagacatgcactctcacaagtacttgtgcattactatccatttgcgggaaggattagggaaggagttggacaaaagttaatggtggattgtactggtga |
20511850 |
T |
|
| Q |
201 |
aggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattccc |
275 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||| |||||||| | | | |||||||||||||| |
|
|
| T |
20511851 |
gggtgtcatgttcattgaagctgaagctaatgtaacacttgatgactttggtgacggtttgcatcccccattccc |
20511925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 181 - 278
Target Start/End: Complemental strand, 14880136 - 14880039
Alignment:
| Q |
181 |
atggtggattgtactggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttg |
278 |
Q |
| |
|
||||||||||| ||||| |||||||| |||| ||||||||||| || ||||| || ||||| || |||||||||||||||||||| ||||| ||||| |
|
|
| T |
14880136 |
atggtggattgcactggagaaggtgttttgtttattgaagctgatgcagatgttactcttaaagagtttggtgatgctcttcatcctccatttccttg |
14880039 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 36307164 - 36307223
Alignment:
| Q |
181 |
atggtggattgtactggtgaaggtgtcatgttcattgaagctgaagctgatgtaacactt |
240 |
Q |
| |
|
||||||||||||| ||| |||||||| ||||||||||| || || ||||||||||||||| |
|
|
| T |
36307164 |
atggtggattgtaatggagaaggtgttatgttcattgaggcagatgctgatgtaacactt |
36307223 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 181 - 278
Target Start/End: Complemental strand, 14789693 - 14789596
Alignment:
| Q |
181 |
atggtggattgtactggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttg |
278 |
Q |
| |
|
||||||||||||| || ||||||| | |||| ||||||||||| |||||||| || ||| | |||||||||| | ||||||||| ||||| ||||| |
|
|
| T |
14789693 |
atggtggattgtaatgatgaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttggtgaagatcttcatcctccatttccttg |
14789596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 14769644 - 14769544
Alignment:
| Q |
181 |
atggtggattgtactggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgtt |
280 |
Q |
| |
|
||||||||||| ||||| |||||||| |||| ||||||||||| || ||||| | | || |||||||||||||||||||| || || || ||||||| |
|
|
| T |
14769644 |
atggtggattgcactggagaaggtgttttgtttattgaagctgatgcagatgttagtttgaaagaatttggtgatgctcttcaacctccttttccttgtt |
14769545 |
T |
|
| Q |
281 |
t |
281 |
Q |
| |
|
| |
|
|
| T |
14769544 |
t |
14769544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 14874850 - 14874750
Alignment:
| Q |
181 |
atggtggattgtactggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgtt |
280 |
Q |
| |
|
||||||||||| ||||| |||||||| |||| ||||||||||| || ||||| || |||| || || |||||| |||||||||| ||||| | ||||| |
|
|
| T |
14874850 |
atggtggattgcactggagaaggtgttttgtttattgaagctgatgcagatgttaccattaaagatttgggtgatactcttcatcctccatttcgttgtt |
14874751 |
T |
|
| Q |
281 |
t |
281 |
Q |
| |
|
| |
|
|
| T |
14874750 |
t |
14874750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 278
Target Start/End: Original strand, 14757227 - 14757324
Alignment:
| Q |
181 |
atggtggattgtactggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttg |
278 |
Q |
| |
|
||||||||||| ||||| |||||||| |||| ||||||||||| || ||||| | | || ||||||||||| | ||||||||| ||||| ||||| |
|
|
| T |
14757227 |
atggtggattgcactggagaaggtgttttgtttattgaagctgatgcagatgttagtttgaaagaatttggtgaagatcttcatcctccatttccttg |
14757324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 181 - 272
Target Start/End: Complemental strand, 91806 - 91715
Alignment:
| Q |
181 |
atggtggattgtactggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccatt |
272 |
Q |
| |
|
||||| ||||||||||| |||||||| |||| ||||||||||| |||||||| || ||||| ||||||||||||| |||||||| ||||| |
|
|
| T |
91806 |
atggttgattgtactggagaaggtgttttgtttattgaagctgatgctgatgttactcttaaacaatttggtgatgcacttcatcctccatt |
91715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0502 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0502
Description:
Target: scaffold0502; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 11576 - 11534
Alignment:
| Q |
198 |
tgaaggtgtcatgttcattgaagctgaagctgatgtaacactt |
240 |
Q |
| |
|
||||||| ||||||||||||||||||| || |||||||||||| |
|
|
| T |
11576 |
tgaaggtatcatgttcattgaagctgatgcagatgtaacactt |
11534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 281
Target Start/End: Original strand, 14857520 - 14857681
Alignment:
| Q |
120 |
aacacttgtgtattactatccacttgcgggaagaattagggagggagctgggcgcaagttgatggtggattgtactggtgaaggtgtcatgttcattgaa |
219 |
Q |
| |
|
||||||||||| ||| |||||| |||| || ||| | ||||| || |||| | ||| | ||||| ||||||| || ||||||| | |||| |||||| |
|
|
| T |
14857520 |
aacacttgtgttttattatccatttgcaggtagattaagggaaggtcctggtaggaagcttatggtagattgtaatgatgaaggtattttgtttattgaa |
14857619 |
T |
|
| Q |
220 |
gctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgttt |
281 |
Q |
| |
|
||||| |||||||| | | || |||||||||||||||||||| || || || |||||||| |
|
|
| T |
14857620 |
gctgatgctgatgttagtttgaaagaatttggtgatgctcttcaacctccttttccttgttt |
14857681 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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