View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_low_1 (Length: 757)
Name: NF17841_low_1
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 2e-73; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 28552465 - 28552654
Alignment:
| Q |
16 |
gttttattttatgaaagatttttataatgattactgaatt--------tggaaatctttaattaagttgattatttttggttggtcaaattagcttcgga |
107 |
Q |
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| T |
28552465 |
gttttattttatgaaagatttttataatgattactgaattactggaattggatatctttaattaagttgatgatttttggttggtcaaattagcttcgga |
28552564 |
T |
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| Q |
108 |
attaacaataatagaaaatttatgttaggttagaaatcttcgatgataaagttttttatttcattgttggctaataatctaatatgatag |
197 |
Q |
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| T |
28552565 |
attaacaataatagaaaatttatgttaggttagaaattttcgatgataaaattttttatttcattgttggctaataatctaatataatag |
28552654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 559 - 718
Target Start/End: Original strand, 28553130 - 28553291
Alignment:
| Q |
559 |
aacactcacacttctcaaacaaatgatgtgccttttaaaaaggacaaaactctgaaagacttacacccaaaacgaacaataccttagaatgcggtgtggc |
658 |
Q |
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| T |
28553130 |
aacactcacacttttcaaacaaatgatgtgccttttaaaaaggacaaaactgtgaaagacttacacccaaagcgaacaataccttagaatgcggtatggc |
28553229 |
T |
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| Q |
659 |
ctacttaaatggtatagagacacacacttaaactaatcttaga--cacacactaaaaataat |
718 |
Q |
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| T |
28553230 |
ctacttaaatggtatagagacacacacttaaactaatcttagacgcacacactaaaactaat |
28553291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 222 - 356
Target Start/End: Original strand, 28552642 - 28552776
Alignment:
| Q |
222 |
tctaatatgatagacaatatgtcaaaacgatgatttgtcaataaaacatgccgacaatatctttattaagaaaataaataaagctcacaatatattacaa |
321 |
Q |
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| T |
28552642 |
tctaatataatagacaatatgtcaaaacgatgatttgtcaataaaacatgcccacaatatctttattaagaaaataaataaagcccacaatatattacaa |
28552741 |
T |
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| Q |
322 |
ggctttatggacacggtcatctaataataatattg |
356 |
Q |
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| T |
28552742 |
ggctttacggacaaggtcgtctaataataatattg |
28552776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 360 - 430
Target Start/End: Original strand, 28553028 - 28553098
Alignment:
| Q |
360 |
aagtcattaatgttcatttccatccttaaatacaccacaccatgttaagaggtattttccgatttggttgt |
430 |
Q |
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| T |
28553028 |
aagtcatcaatgttcatttccatccttaagtacaccacaccgtgttaagaggtacttttcgatttggttgt |
28553098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 408 - 527
Target Start/End: Complemental strand, 15710030 - 15709911
Alignment:
| Q |
408 |
gaggtattttccgatttggttgtaagcccttcacttttttatcttatttaaaaggcacctcattggtttaaagagtgtgggtgttgtatataaactaact |
507 |
Q |
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| T |
15710030 |
gaggtattgtccgctttggatgtaagcccttcacggtgtttccctttataaaaggcgcctcgttggtttgaggagtgtgggtgttgtatataaactaccc |
15709931 |
T |
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| Q |
508 |
ttggcctcgactcccaagcg |
527 |
Q |
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| T |
15709930 |
ttggcctcaactccaaagcg |
15709911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 546
Target Start/End: Original strand, 2367378 - 2367417
Alignment:
| Q |
507 |
tttggcctcgactcccaagcgatgtgggacttttaaggtg |
546 |
Q |
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| T |
2367378 |
tttggcctcgattcccaagcaatgtgggacttttaaggtg |
2367417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 602 - 664
Target Start/End: Complemental strand, 9081423 - 9081361
Alignment:
| Q |
602 |
acaaaactctgaaagacttacacccaaaacgaacaataccttagaatgcggtgtggcctactt |
664 |
Q |
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| T |
9081423 |
acaaaaccgtgaacgacttacacccaaagaggacaatacgttagaatgcggtgtggcgtactt |
9081361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 504
Target Start/End: Complemental strand, 41929021 - 41928976
Alignment:
| Q |
459 |
aaggcacctcattggtttaaagagtgtgggtgttgtatataaacta |
504 |
Q |
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| T |
41929021 |
aaggcgcctcattggttagaggagtgtgggtgttgtatataaacta |
41928976 |
T |
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