View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_low_10 (Length: 567)
Name: NF17841_low_10
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 310 - 555
Target Start/End: Original strand, 54799308 - 54799554
Alignment:
| Q |
310 |
ttaataagataaataatttcacatataaaacattaaaacttctctcatgcattatttatgttgaggtgaaattttgttatgttgctcttaatag-ttgct |
408 |
Q |
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| T |
54799308 |
ttaataagataaataatttcacatataaaacattaaaacttctctcatgcattatttatgttgaggtgaaattttgttatgttgctcttaatagtttgct |
54799407 |
T |
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| Q |
409 |
tgatgtcctatcaacgaaatgtcctatcccaaacatgtaagatatttgnnnnnnnttgtatgtaccagtgtacaacacaacattttttcctttactattt |
508 |
Q |
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| T |
54799408 |
tgatgtcctatcaacgaaatgtcctatcccaaacatgtaagatatttgaaaaaaattgtatgtaccagtgtacaacacaacattttttcctatactattt |
54799507 |
T |
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| Q |
509 |
aattataagaagtaattaagttcgtttcccctacctatatatgccta |
555 |
Q |
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| T |
54799508 |
aattataagaagtaattaagttcgtttcccctacctatatatgccta |
54799554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 118 - 314
Target Start/End: Original strand, 54799080 - 54799277
Alignment:
| Q |
118 |
cagcagcttgtatttgactacaactacaaatactttgtcatatatataatacatacgaaacttttctatggatcttggagagtccaaatcaaaaatcaca |
217 |
Q |
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| T |
54799080 |
cagcagcttgtatttgactacaactacaaatactttgtcatatatataatacatacgaaacttttctatggatcttggagagtccaaatcaaaaatcaca |
54799179 |
T |
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| Q |
218 |
cgacctcaatacttgttattggtaaaaataagaaaataacatcaacaactaaagcactaagccaaggaaaacaactacccc-taacatcttccttaat |
314 |
Q |
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| T |
54799180 |
cgacctcaatatttgttattggtaaaaataagaaaataacatcaacaactaaagcactaagccaaggaaaacaactaccccttaacatcttccttaat |
54799277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 54798953 - 54799052
Alignment:
| Q |
20 |
agttggagcatggaaagcttctcgcaatagcaaaggctacttgctagatttaggaaaagtaagcacaccaatttgtactcataaagttgttttaattaca |
119 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54798953 |
agttggagcatggaaagcttctagcaatagcaaaggctacttactagatttaggaaaagtaagcacaccaatttgtactcataaagttgttttaattaca |
54799052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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