View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_low_11 (Length: 566)
Name: NF17841_low_11
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 20 - 546
Target Start/End: Original strand, 4458173 - 4458715
Alignment:
| Q |
20 |
agtatagagccttagctagtcttacttgtgaaattcaatggcttcactgtttacttaatgatcttcttaatcccctctttacgccttctgcagtttactg |
119 |
Q |
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| T |
4458173 |
agtatagagccttagctagtcttacttgtgaaattcaatggcttcactgtttacttaatgatcttcttaatcccctctttacgccttctgcagtttactg |
4458272 |
T |
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| Q |
120 |
tgacaacaaatctgctatctatcttgcccacaatccgacctttcacgaacgatcgaagcacatcgaaattaattgtcatgttatccgcaagaagatcaga |
219 |
Q |
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| T |
4458273 |
tgacaacaaatccactatctaccttgcccacaatccgacctttcatgaacaatcgaagcacatcgaaattgattgtcatgttatccacaagaagatcaga |
4458372 |
T |
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| Q |
220 |
aaaggactcattcatttactacatgtgccttcctcctctcagctggataatatgtcttcactaagcctc--------------ttcacttcttttatttc |
305 |
Q |
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| T |
4458373 |
aaaggactcattcatttactacatgtgccttcctcctctcagctggata--atgtcttcactaagcctcttcatgtcacgtaattcacttcttttatttc |
4458470 |
T |
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| Q |
306 |
caagctaggcctttgtaatttacatagcccaaacttgagggagggtgttacttaacttaactggttatagttatttacttacactaaccattgttagttg |
405 |
Q |
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| T |
4458471 |
caagctaggcctttgtaatttacatagcccaaacttgagggagggtgttacttaacttaactggttatagttatttacttacactaaccattgttagttg |
4458570 |
T |
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| Q |
406 |
atttattagttctagttagtacccaaattactacatagatta----nnnnnnnnnnnncacttggtactgttactgattactagaaaaacatttgtacac |
501 |
Q |
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| T |
4458571 |
atttattagttctagttagtatccaaattactacatagattagtgtgtgtgtgtgtgtcacttggtactgttactgattactagaaaaacatttctacac |
4458670 |
T |
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| Q |
502 |
ttttcactttatatttaatatgaagatgagtttattattctctct |
546 |
Q |
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| T |
4458671 |
ttttcactctatatttaatatgaagatgagtttattattctctct |
4458715 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 8639703 - 8639743
Alignment:
| Q |
25 |
agagccttagctagtcttacttgtgaaattcaatggcttca |
65 |
Q |
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| T |
8639703 |
agagccttagccagccttacttgtgagattcaatggcttca |
8639743 |
T |
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