View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_low_12 (Length: 548)
Name: NF17841_low_12
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 24 - 548
Target Start/End: Original strand, 32688409 - 32688932
Alignment:
| Q |
24 |
tgtgaagaagggaacttccaacattggaattatatatcctaaaaatgcagaagtttgcttgctatattcagattggtggtggtcatgaaagtaatagcaa |
123 |
Q |
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| T |
32688409 |
tgtgaagaagggaacttccaacattggaattatatatcctaaaaatgcagaagtttgcttgctatattcagattggtg-tggtcatgaaagtaatagcaa |
32688507 |
T |
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| Q |
124 |
aacacagtagataatgcttttgtgtgtgggaaaatcctctgggcatcggacaaatagtttatggcagtggccaaatgtaaagtgaggtcgagcatgttgt |
223 |
Q |
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| T |
32688508 |
aacacagtagataatgcttttgtgtgtgggaaaatcctctgggcatcggacaaatagtttatggtggtggccaaatgtaaagtgaggtcgagcatgttgt |
32688607 |
T |
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| Q |
224 |
tacaatgtctatgaggccttgcatgccttgtggcttgatagttgatacattatattgctgcaggagatgaaagtaaaggtattgcaactgttaacttact |
323 |
Q |
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| T |
32688608 |
tacaatgactatgaggccttgcatgccttatggcttgatagttgatacattatattgctgcaggagatgaaagtaaaggtattgcaactgttaacttgct |
32688707 |
T |
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| Q |
324 |
gtctcaacaattaaattggctaagcgtccaattgctcatgggagaaccaaacacactgacataacaacattaggtttcatttgcttaaaagtgaaaactg |
423 |
Q |
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| T |
32688708 |
gtctcaacaattaaattggctaagcgtccaattgctcatgggagaaccaaacacactgacataacgacatgaggtttcatttgcttaaaagtgaaaactg |
32688807 |
T |
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| Q |
424 |
aaaatcaagaaaatatgaacttggaactgaggagaacgttagttctggtttccgttggatatttagttatatgtgaaaagtttaaaatcatgaattccca |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32688808 |
aaaatcaagaaaatatgaacttggaactgaggagaacgttagttctggtttccgttggatatttagttatatgtgaaaagtttaaaatcatgaattccca |
32688907 |
T |
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| Q |
524 |
catcactaactgaagaatataaaat |
548 |
Q |
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| T |
32688908 |
catcactaactgaagaatataaaat |
32688932 |
T |
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