View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_low_16 (Length: 529)
Name: NF17841_low_16
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 183 - 515
Target Start/End: Complemental strand, 55989177 - 55988850
Alignment:
| Q |
183 |
tgttaaagttgaacagatacatctaccaagttctgaagaaggtgcaccctgacattgctatatctgctgaggccattaatatgatgatgaacactatctt |
282 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55989177 |
tgttaaagttgaacagatacatctaccaagttctgaagaaggtgcaacctgacattgctatatctgctgaggccattaatatgatgatgaacactatctt |
55989078 |
T |
|
| Q |
283 |
aacagacatgatttttgaagcttgctcagaaagctgcttccaagcataacaaaatacgtcacaagaattcaccactggtcgagcctgacatctcgtctgc |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55989077 |
aacagacatgatttttgaagcttgctcagaaagctgcttccaagcataataaaatacgtcacaagaattcaccactggtcgagcctgacatctcgtctgc |
55988978 |
T |
|
| Q |
383 |
ggttagggaagtctttcccgaagatatggccggccttgccctcttatcagctttcaattctgtaatcagattggatgtagaagacatctgtcatggaatc |
482 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| |||| |
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| T |
55988977 |
ggttagggaagtctttcccgaagatatggccgaccttgccctcttatcagctttcaattatgtaatcagattgaatgtagaagacat-----atgtaatc |
55988883 |
T |
|
| Q |
483 |
accaaaatgtagatagatagttgtattcccatt |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
55988882 |
accaaaatgtagatagatagttgtattcccatt |
55988850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 183 - 497
Target Start/End: Complemental strand, 55325158 - 55324851
Alignment:
| Q |
183 |
tgttaaagttgaacagatacatctaccaagttctgaagaaggtgcaccctgacattgctatatctgctgaggccattaatatgatgatgaacactatctt |
282 |
Q |
| |
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||||||||||||||| || ||||||| |||||||||||||||| ||||||||||||||||||||||| | ||| | | || |||||||||||||||| |
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| T |
55325158 |
tgttaaagttgaacaaattcatctacgaagttctgaagaaggttcaccctgacattgctatatctgccggggctgtgga-at--tgatgaacactatctt |
55325062 |
T |
|
| Q |
283 |
aacagacatgatttttgaagcttgctcagaaagctgcttccaagcataacaaaatacgtcacaagaattcaccactggtcgagcctgacatctcgtctgc |
382 |
Q |
| |
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|||||||||||| || ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55325061 |
aacagacatgatgtt-gaagcttgctcagaaagct---tcgaagcataacaaaatacgtcacaagaattcaccactggtcgagcctgacatctccgctgc |
55324966 |
T |
|
| Q |
383 |
ggttagggaagtctttcccgaagatatggccggccttgccctcttatcagctttcaattctgtaatcagattggatgtagaagacatctgtcatggaatc |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||| || |||||||||||||||||||||||||| |
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| T |
55324965 |
ggttagggaagtctttcccgaagatatggccggccttgccctcttatccgctttgaaatcagtaatcagaatgaatgtagaagacatctgtcatggaatc |
55324866 |
T |
|
| Q |
483 |
accaaaatgtagata |
497 |
Q |
| |
|
|| || ||||||||| |
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|
| T |
55324865 |
actaagatgtagata |
55324851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 183 - 412
Target Start/End: Complemental strand, 55972918 - 55972696
Alignment:
| Q |
183 |
tgttaaagttgaacagatacatctaccaagttctgaagaaggtgcaccctgacattgctatatctgctgaggccattaatatgatgatgaacactatctt |
282 |
Q |
| |
|
|||||||||| |||| |||||||||| ||||||| |||||||| || |||||||||||||| |||| ||| ||| | || |||||||||||| | | |
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| T |
55972918 |
tgttaaagtttaacaaatacatctactaagttcttaagaaggttcatcctgacattgctatctctggtgaagccctggat---atgatgaacactcttat |
55972822 |
T |
|
| Q |
283 |
aacagacatgatttttgaagcttgctcagaaagctgcttccaagcataacaaaatacgtcacaagaattcaccactggtcgagcctgacatctcgtctgc |
382 |
Q |
| |
|
||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || | |
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|
| T |
55972821 |
aacagacatga-tgttgaagcttgctcagaaa---gcttccaagcataacaaaatacgtcacaagaattcaccactggtcgagcctgacatatccgctac |
55972726 |
T |
|
| Q |
383 |
ggttagggaagtctttcccgaagatatggc |
412 |
Q |
| |
|
|||| | ||||||||||| ||||| ||||| |
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| T |
55972725 |
ggtttgtgaagtctttcctgaagacatggc |
55972696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 55990007 - 55989925
Alignment:
| Q |
8 |
agattattctagcacccttcttgcatgattgtttcactttgggtcttcaagttctttcttctcatatttttggtggggtgctt |
90 |
Q |
| |
|
||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55990007 |
agattcttctagcgcccttcttgcataattgtttcactttgggtcttcaagttctttcttctcatatttttggtggggtgctt |
55989925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 55989274 - 55989215
Alignment:
| Q |
86 |
tgcttaatctataaataccctataatcatcgcacaaaatggaactgaagatacgaccggt |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55989274 |
tgcttaatctataaataccctataatcatcgcacaaaatggaactgaagatacgaccggt |
55989215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 24269123 - 24269061
Alignment:
| Q |
22 |
cccttcttgcatgattgtttcactttgggtcttcaagttctttcttctcatatttttggtggg |
84 |
Q |
| |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24269123 |
cccttcttgcataattgtttcactttggatcttcaagttctttcttctcatatttttggtggg |
24269061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 27909264 - 27909340
Alignment:
| Q |
8 |
agattattctagcacccttcttgcatgattgtttcactttgggtcttcaagttctttcttctcatatttttggtggg |
84 |
Q |
| |
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||||| ||||||| |||||||||||| | ||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27909264 |
agattcttctagcgcccttcttgcataaatgtatcactttgtgtcttcaagttctttcttctcatatttttggtggg |
27909340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 3604565 - 3604516
Alignment:
| Q |
35 |
attgtttcactttgggtcttcaagttctttcttctcatatttttggtggg |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
3604565 |
attgtttcactttgggtcttcaagttctttcatctcatatttttggtggg |
3604516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 10876799 - 10876858
Alignment:
| Q |
30 |
gcatgattgtttcactttgggtcttcaagttctttcttctcatatttttggtggggtgct |
89 |
Q |
| |
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|||| ||| ||||||||||| |||||| ||||||||||||||||||||||||||| |||| |
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| T |
10876799 |
gcataattatttcactttggatcttcacgttctttcttctcatatttttggtgggatgct |
10876858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 10881870 - 10881929
Alignment:
| Q |
30 |
gcatgattgtttcactttgggtcttcaagttctttcttctcatatttttggtggggtgct |
89 |
Q |
| |
|
|||| ||| ||||||||||| |||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
10881870 |
gcataattatttcactttggatcttcacgttctttcttctcatatttttggtgggatgct |
10881929 |
T |
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Back To:
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