View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_low_18 (Length: 493)
Name: NF17841_low_18
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 20 - 486
Target Start/End: Original strand, 48016115 - 48016581
Alignment:
| Q |
20 |
atgcggctcctcaccagagcatatcaaacgaggatgcgatacattgtagtaccactccatgtatgtctctgtgacctcaaatgtatatgtcaccggaagt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48016115 |
atgcggctcctcaccagagcatatcaaacgaggatgcgatacattgtagtaccactccatgtatgtctctgtgacctcaaatgtatatgtcaccggaagt |
48016214 |
T |
|
| Q |
120 |
gctccttcaatgacccgatgcacacttgaatggtaatcaatccactcagcatcgacatcaaaggtacgaggatctggaggaggtggtggtatatattgca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48016215 |
gctccttcaatgacccgatgcacacttgaatggtaatcaatccactcaacatcgacatcaaaggtacgaggatctggaggaggtggtggtatatattgca |
48016314 |
T |
|
| Q |
220 |
tgtatccaaattgtcggaggcacctctgaggcaagtaaagtactaaagtgttgcaccaacgaagacaaccattgtatagacatatatcatcaaatggaat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48016315 |
tgtatccaaattgtcggaggcacctctgaggcaagtaaagtactaaagtgttgcaccaacgaagacaaccattgtatagacatatatcatcaaatggaat |
48016414 |
T |
|
| Q |
320 |
tatctggcggtgactttcaaatgggcgccatatgacacttgcaggtgtcagatcatctatcaaccttcgtatttgatcaaccttaagagtcccttgttta |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48016415 |
tatctggcggtgactttcaaatgggcgccatatgacacttgcaggtgtcagatcatctatcaaccttcgtatttgatcaaccttaagagtcccttgttta |
48016514 |
T |
|
| Q |
420 |
tacttccatcgcatagctcgagcggcgcctttttctggcttatcacaacaaattcgactctctgctc |
486 |
Q |
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| T |
48016515 |
tacttccatcgcatagctcgagcggcgcctttttctggcttatcacaacaaattcgactctctgctc |
48016581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 49 - 442
Target Start/End: Original strand, 31854638 - 31855031
Alignment:
| Q |
49 |
gaggatgcgatacattgtagtaccactccatgtatgtctctgtgacctcaaatgtatatgtcaccggaagtgctccttcaatgacccgatgcacacttga |
148 |
Q |
| |
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||||||| ||||| ||||||||||||||||||||||| || ||||||||||||| ||||| | || |||| || |||||| | ||| |||| || |
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| T |
31854638 |
gaggatgtgatactttgtagtaccactccatgtatgtatccgtgacctcaaatggatatgaagtcagatgtgcatctccaatgatctgatttgcactgga |
31854737 |
T |
|
| Q |
149 |
atggtaatcaatccactcagcatcgacatcaaaggtacgaggatctggaggaggtggtggtatatattgcatgtatccaaattgtcggaggcacctctga |
248 |
Q |
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|||| ||||| |||||||| |||| |||| ||| ||| | || |||||| ||| ||||||||||||| ||||||||||| ||||| |||||||||| |
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| T |
31854738 |
atggcaatcattccactcaacatctacattaaacgtattaaaatttggaggtggtcgtggtatatattgtatgtatccaaactgtcgaaggcacctctcg |
31854837 |
T |
|
| Q |
249 |
ggcaagtaaagtactaaagtgttgcaccaacgaagacaaccattgtatagacatatatcatcaaatggaattatctggcggtgactttcaaatgggcgcc |
348 |
Q |
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| T |
31854838 |
ggcaagtaaggaactacattgctgcaccaacgaatataaccactggatagacatatatcatcaaaaggaattacttggcgatgactatcaaatggacacc |
31854937 |
T |
|
| Q |
349 |
atatgacacttgcaggtgtcagatcatctatcaaccttcgtatttgatcaaccttaagagtcccttgtttatacttccatcgcatagctcgagc |
442 |
Q |
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|||||||| ||||||||| || ||||||| ||||||||||||||||||||| ||| | || || ||||||||| |||||||||||||| |
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| T |
31854938 |
atatgacatcattaggtgtcaggtcgtctatcatccttcgtatttgatcaaccttgagattgccgcgtggatacttccaccgcatagctcgagc |
31855031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 89 - 342
Target Start/End: Original strand, 5374130 - 5374383
Alignment:
| Q |
89 |
tgtgacctcaaatgtatatgtcaccggaagtgctccttcaatgacccgatgcacacttgaatggtaatcaatccactcagcatcgacatcaaaggtacga |
188 |
Q |
| |
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|||||||| |||| |||||||||| |||||| |||||||| || ||||||||||| ||||||||||||||||||| |||| |||||||||||| || |
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| T |
5374130 |
tgtgaccttaaattaatatgtcaccagaagtgatccttcaacgaatcgatgcacactagaatggtaatcaatccacttgacatctacatcaaaggtatga |
5374229 |
T |
|
| Q |
189 |
ggatctggaggaggtggtggtatatattgcatgtatccaaattgtcggaggcacctctgaggcaagtaaagtactaaagtgttgcaccaacgaagacaac |
288 |
Q |
| |
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|||| ||| ||||||||||||||| | | |||||| ||||| ||||| |||| |||||||||| | |||| ||| |||||| | |||||||| |
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| T |
5374230 |
aaatctaaaggtggtggtggtatatatcttctatgtccaaactgtcgaaggcaactctcaggcaagtaaggaactactatgtcgcaccaccaaagacaac |
5374329 |
T |
|
| Q |
289 |
cattgtatagacatatatcatcaaatggaattatctggcggtgactttcaaatg |
342 |
Q |
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|| ||| | |||| |||||||||||| |||||||| | ||||| ||||||| |
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| T |
5374330 |
caacgtaaatacatgtatcatcaaatgagattatctgacaatgactctcaaatg |
5374383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 38 - 246
Target Start/End: Complemental strand, 5373692 - 5373485
Alignment:
| Q |
38 |
gcatatcaaacgaggatgcgatacattgtagtaccactccatgtatgtctctgtgacctcaaatgtatatgtcaccggaagtgctccttcaatgacccga |
137 |
Q |
| |
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||||||||||| ||||| ||||| |||||||||||||||||||||||| ||| ||||||||| |||||||| | |||| ||| | ||||||| | | |
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| T |
5373692 |
gcatatcaaacaaggatatgatactttgtagtaccactccatgtatgtccaggtggcctcaaatggatatgtcatcaaaagtactcttccaatgactcaa |
5373593 |
T |
|
| Q |
138 |
tgcacacttgaatggtaatcaatccactcagcatcgacatcaaaggtacgaggatctggaggaggtggtggtatatattgcatgtatccaaattgtcgga |
237 |
Q |
| |
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|||||||| ||| ||||||||| ||| | ||| |||||||||||| | || || ||| |||||||||||||||| |||||||||| ||||||| |
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| T |
5373592 |
tgcacactaaaatagtaatcaatttgctcggtatctacatcaaaggtatggccatatgaaggtggtggtggtatatatt-tatgtatccaacatgtcgga |
5373494 |
T |
|
| Q |
238 |
ggcacctct |
246 |
Q |
| |
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||||||||| |
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| T |
5373493 |
ggcacctct |
5373485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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