View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_low_2 (Length: 723)
Name: NF17841_low_2
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 10 - 310
Target Start/End: Complemental strand, 7248283 - 7247983
Alignment:
| Q |
10 |
ataattctaattccttcaagcagttttacatatatataagcttactgaatttcacaagtgcactatgatatgatatctccttccaaatattctatttggt |
109 |
Q |
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| T |
7248283 |
ataattctaattcgttcaagccgttttacatatatataagcttactgaatttcacaagtgcactatgatatgatatctccttccaaatattctatttggt |
7248184 |
T |
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| Q |
110 |
ctgtgatttacaactgataagtgatatccatacatacataatataacagtt-aaacaggttttgttaaaacaataaactgttaagcaggtatctttgttt |
208 |
Q |
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| T |
7248183 |
ctgtgattcacaactgataagtgatatccatacatacataatataacagttaaaacaggttttgttaaaacaataaactgttaagcaggtatctttgatt |
7248084 |
T |
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| Q |
209 |
gaaatgaataattctctgcagtagtcggtatattggtaatggttggatcaacattgaccactttaagtaatgaagaattttctgaaaatccatatacata |
308 |
Q |
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| T |
7248083 |
gaaatgaataattctctgcagtagtcggtatattggtaatggttggatcaacattgaccac-ttaagtaatgaagaattttctgaaaatccatatacata |
7247985 |
T |
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| Q |
309 |
aa |
310 |
Q |
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|| |
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| T |
7247984 |
aa |
7247983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 457 - 676
Target Start/End: Complemental strand, 7247962 - 7247733
Alignment:
| Q |
457 |
gcatgattcatgagtgattgaaagtaaataccaaaacaata------ctggtagtat--tataatttgaattactaaaattttgaccaaccttcattcat |
548 |
Q |
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| T |
7247962 |
gcatgattcatgagtgattgaaagtaaataccaaaacaataataatactggtagtatattataatttgaattactaaaattttgaccaaccttcattcat |
7247863 |
T |
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| Q |
549 |
cttcaatcttaattattg--accatgattcgtaggattttgaactcttctctcacacttcgtccccttccttctctcccatcaccactacccaaaccaaa |
646 |
Q |
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| T |
7247862 |
cttcaatcttaattacttctaacatgattcgtaggattttgaactcttctctcacccttcgtcccattccctctctcccatcaccattacccaaaccaaa |
7247763 |
T |
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| Q |
647 |
acctaacaacttctcattccaaattctcaa |
676 |
Q |
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| T |
7247762 |
acctaacaacttctcattccaaattctcaa |
7247733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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