View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17841_low_21 (Length: 464)

Name: NF17841_low_21
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17841_low_21
NF17841_low_21
[»] chr6 (5 HSPs)
chr6 (11-447)||(29469971-29470407)
chr6 (262-318)||(29673111-29673167)
chr6 (262-312)||(28489745-28489795)
chr6 (258-312)||(29757945-29757999)
chr6 (262-312)||(29802155-29802205)
[»] chr1 (1 HSPs)
chr1 (217-362)||(5921640-5921785)
[»] chr5 (1 HSPs)
chr5 (229-443)||(13717967-13718174)
[»] chr8 (1 HSPs)
chr8 (258-312)||(12590836-12590890)
[»] scaffold0012 (2 HSPs)
scaffold0012 (258-312)||(211097-211151)
scaffold0012 (258-312)||(237783-237837)


Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Complemental strand, 29470407 - 29469971
Alignment:
Q  11 aagaaccaacaaacaaataagaaagtggatatattaatatacaatgggaaaataaatatatcacacttgccttcttgaaaaagtcctcccaggcgaatga 110  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  29470407 aagaaccaacaaacaaataagaaagtggatatattgatatacgatgggaaaataaatatatcacacttgccttcttgaaaaagtcatcccacgcgaatga 29470308  T
Q  111 tgtagagtaagacggaatcttgcatatggcaagttttcttggataaaattgagacggtaaaccccatgaaggatataggtgatgttcaagtattcttaga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29470307 tgtagagtaagacggaatcttgcatatggcaagttttcttggataaaattgagacggtaaaccccatgaaggatataggtgatgttcaagtattcttaga 29470208  T
Q  211 ctgttcggaagatttttgggactttcagtaaattggccatccataataattagtgttctgaggttttccatcttcttgaaagcctcttcatcccattcta 310  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29470207 ctgttcggaagatttttgggactctcagtaaattggccatccataataattagtgttctgaggttttccatcttcttgaaagcctcttcatcccattcta 29470108  T
Q  311 cttcaatccgggagcttggacatatgatttcaattttacttgttcccttttagcatgaaaaagcacaaaacaccaaaatacatgtacatatgttagtgct 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  29470107 cttcaatccgggagcttggacatatgatttcaattttacttgttcccttttagcatgaaaaagcacaaaataccaaaatacatgtacatatgttagtact 29470008  T
Q  411 tcaacacacctatttatagaatttgacatattgtaat 447  Q
    ||||| |||||||||||||||||||||||||||||||    
T  29470007 tcaactcacctatttatagaatttgacatattgtaat 29469971  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 29673111 - 29673167
Alignment:
Q  262 agtgttctgaggttttccatcttcttgaaagcctcttcatcccattctacttcaatc 318  Q
    |||||| |||| |||||||||||||||||||| ||| ||||||||| ||||||||||    
T  29673111 agtgttttgagattttccatcttcttgaaagcttctccatcccattgtacttcaatc 29673167  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 28489745 - 28489795
Alignment:
Q  262 agtgttctgaggttttccatcttcttgaaagcctcttcatcccattctact 312  Q
    |||||| |||| |||||||||||||||||||| ||| ||||||||||||||    
T  28489745 agtgttttgagattttccatcttcttgaaagcttctccatcccattctact 28489795  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 29757945 - 29757999
Alignment:
Q  258 aattagtgttctgaggttttccatcttcttgaaagcctcttcatcccattctact 312  Q
    |||||||||| |||| |||||||||||||||||||| ||| |||||||| |||||    
T  29757945 aattagtgttttgagattttccatcttcttgaaagcttctccatcccatgctact 29757999  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 29802155 - 29802205
Alignment:
Q  262 agtgttctgaggttttccatcttcttgaaagcctcttcatcccattctact 312  Q
    |||||| |||| |||||||||||||||||||| ||| ||||||||||||||    
T  29802155 agtgttttgagattttccatcttcttgaaagcttctccatcccattctact 29802205  T

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Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 217 - 362
Target Start/End: Original strand, 5921640 - 5921785
Alignment:
Q  217 ggaagatttttgggactttcagtaaattggccatccataataattagtgttctgaggttttccatcttcttgaaagcctcttcatcccattctacttcaa 316  Q
    ||||||| |||||||||||||| |||    |||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5921640 ggaagatatttgggactttcagaaaaagcaccatgcctaataattagcgttctgaggttttccatcttcttgaaagcctcttcatcccattttacttcaa 5921739  T
Q  317 tccgggagcttggacatatgatttcaattttacttgttccctttta 362  Q
    |   |||      | |||||||||||||||||||||||||||||||    
T  5921740 tggaggaatccaaatatatgatttcaattttacttgttccctttta 5921785  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 229 - 443
Target Start/End: Complemental strand, 13718174 - 13717967
Alignment:
Q  229 ggactttcagtaaattggccatccataataattagtgt--tctgaggttttccatcttcttgaaagcctcttcatcccattctacttcaatccgggagct 326  Q
    |||| |||||||||||| |||| || ||||||||||||  | |||||| ||||||||||||||||||||||          ||||||||| || |||| |    
T  13718174 ggacattcagtaaattgaccatacaaaataattagtgtgttatgaggtattccatcttcttgaaagcctct----------ctacttcaacccaggagtt 13718085  T
Q  327 tggacatatgatttcaattttacttgttcccttttagcatgaaaaagcacaaaacac-caaaatacatgtacatatgttagtgcttcaacacacctattt 425  Q
    | ||| ||||||||||||||||||| |||| ||| | || || |||||||||| ||  ||||||| |||||||||||||||  ||||||||| |||||||    
T  13718084 ttgacgtatgatttcaattttacttcttccttttaaacacgataaagcacaaatcaaacaaaataaatgtacatatgttagaacttcaacactcctattt 13717985  T
Q  426 atagaatttgacatattg 443  Q
    | |||| || ||||||||    
T  13717984 agagaaattaacatattg 13717967  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 12590890 - 12590836
Alignment:
Q  258 aattagtgttctgaggttttccatcttcttgaaagcctcttcatcccattctact 312  Q
    |||||||||| |||| |||||||||||||||||||| ||||||||||||||||||    
T  12590890 aattagtgttttgagattttccatcttcttgaaagcttcttcatcccattctact 12590836  T

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Target: scaffold0012 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 211097 - 211151
Alignment:
Q  258 aattagtgttctgaggttttccatcttcttgaaagcctcttcatcccattctact 312  Q
    |||||||||| |||| |||||||||||||||||||| ||| |||||||| |||||    
T  211097 aattagtgttttgagattttccatcttcttgaaagcttctccatcccatgctact 211151  T

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Target: scaffold0012; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 237783 - 237837
Alignment:
Q  258 aattagtgttctgaggttttccatcttcttgaaagcctcttcatcccattctact 312  Q
    |||||||||| | || |||| ||||||||||||||| ||| ||||||||||||||    
T  237783 aattagtgttttcagatttttcatcttcttgaaagcttctccatcccattctact 237837  T

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