View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_low_22 (Length: 457)
Name: NF17841_low_22
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 391
Target Start/End: Complemental strand, 26100157 - 26099779
Alignment:
| Q |
15 |
caaaggaaaattacaatggcacatgattaatttcaattttgatcaaccttcccttctcataagctaacaataaacacacaattcccctnnnnnnncaaaa |
114 |
Q |
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| T |
26100157 |
caaaggaaaattacaatggcacatgattaatttcaattttgatcaaccttcccttctcagaagccaataataaacacacaattcccctaaaaaaacaaaa |
26100058 |
T |
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| Q |
115 |
ttacacacaattattcccacgcaaacccattacttgtcgtgctatcgttaatgtatgtcaattatgtgtgactagcttgnnnnnnn--aggggggagtga |
212 |
Q |
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| T |
26100057 |
ttacacacaattattcccacgcaaacccattacttgtcgtgctaccgttaatgtatgtcaattatgtgtgactagcttgtttttttttaggggggagtga |
26099958 |
T |
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| Q |
213 |
ctagcttgttataatttttaattagaaataacattacccacattttttaaattgacaatgaattattccgactaattgcaagcatatatggaaactaatt |
312 |
Q |
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| T |
26099957 |
ctagcttgttataatttttaattagaaataacattacccacattttttaaattggcaatgaattattccgactaattgcaagcatatatggaaactaatt |
26099858 |
T |
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| Q |
313 |
tgaataaatgatgttgctttattttctaaaagactcctaaaactagtgggttagatttatggcaagacaacatgcagct |
391 |
Q |
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| T |
26099857 |
tgcataaatgatgttgctttattttctaaaagactcctaaaactagtgggttagatttatggcaagacaacatgcagct |
26099779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 53435993 - 53435909
Alignment:
| Q |
210 |
tgactagcttgttataatttttaattagaaataacattacccacattttttaaattgacaatgaattattccgactaattgcaag |
294 |
Q |
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| T |
53435993 |
tgactagcttgttataatttttaattagaaataacattacccgcaattttaaaaaagacattgaattattccaactaattgcaag |
53435909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 325 - 395
Target Start/End: Complemental strand, 53435847 - 53435777
Alignment:
| Q |
325 |
gttgctttattttctaaaagactcctaaaactagtgggttagatttatggcaagacaacatgcagctagag |
395 |
Q |
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| T |
53435847 |
gttgctttagtttctaaaagactcctaaaattagtgttttagatttatggcaagacaacatgcagctagag |
53435777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 48369581 - 48369627
Alignment:
| Q |
22 |
aaattacaatggcacatgattaatttcaattttgatcaaccttcccttc |
70 |
Q |
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| T |
48369581 |
aaattacaatggcacatgattaa--tctattttgatcaaccttcccttc |
48369627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 53436112 - 53436060
Alignment:
| Q |
22 |
aaattacaatggcacatgattaatttcaattttgatc-aaccttcccttctca |
73 |
Q |
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| T |
53436112 |
aaattacaacagcacatgattaatttctattttgatctaaccttcccttctca |
53436060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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