View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17841_low_25 (Length: 419)

Name: NF17841_low_25
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17841_low_25
NF17841_low_25
[»] chr2 (3 HSPs)
chr2 (24-183)||(32271508-32271668)
chr2 (295-340)||(32271466-32271511)
chr2 (355-401)||(45420990-45421036)
[»] chr5 (1 HSPs)
chr5 (354-401)||(10487526-10487573)
[»] chr4 (4 HSPs)
chr4 (354-401)||(5817801-5817848)
chr4 (354-401)||(8655693-8655740)
chr4 (354-401)||(3130598-3130645)
chr4 (354-401)||(47540399-47540446)
[»] chr3 (4 HSPs)
chr3 (354-401)||(32004454-32004501)
chr3 (354-401)||(13447953-13448000)
chr3 (354-401)||(38542836-38542883)
chr3 (354-401)||(30167967-30168014)
[»] chr1 (8 HSPs)
chr1 (354-401)||(14366244-14366291)
chr1 (354-401)||(4644486-4644533)
chr1 (354-401)||(21527634-21527681)
chr1 (357-401)||(9528373-9528417)
chr1 (354-401)||(52336136-52336183)
chr1 (354-401)||(36928640-36928686)
chr1 (354-401)||(48266338-48266385)
chr1 (369-401)||(17921631-17921663)
[»] scaffold0220 (1 HSPs)
scaffold0220 (354-401)||(22833-22880)
[»] scaffold0029 (1 HSPs)
scaffold0029 (354-397)||(135260-135303)
[»] scaffold0002 (2 HSPs)
scaffold0002 (354-397)||(313087-313130)
scaffold0002 (354-397)||(328541-328584)
[»] chr8 (1 HSPs)
chr8 (354-401)||(12531197-12531244)
[»] chr7 (4 HSPs)
chr7 (354-401)||(15654327-15654374)
chr7 (354-401)||(19402691-19402738)
chr7 (354-400)||(9534145-9534191)
chr7 (354-401)||(21277672-21277718)
[»] chr6 (2 HSPs)
chr6 (354-401)||(33629572-33629619)
chr6 (356-401)||(1682516-1682561)
[»] scaffold0012 (1 HSPs)
scaffold0012 (357-395)||(48583-48621)


Alignment Details
Target: chr2 (Bit Score: 121; Significance: 7e-62; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 24 - 183
Target Start/End: Complemental strand, 32271668 - 32271508
Alignment:
Q  24 tgttaaacaaaatagatatatttggttaaattttttaatggaatacattaactttgttcaacttttatttattcattttata-tttgggaccataataat 122  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||| | ||||||||||    
T  32271668 tgttaaacaaaattgatatatttggttaaattttttaatggaatacaataactttgttcaacttttatttatttattttatattttgaggccataataat 32271569  T
Q  123 atgtacattgaatttgctttattgaccgtttgttacacgttagtcatgcgttcatccacca 183  Q
    || |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  32271568 atctacattgaatttgctttattgaccgtttgttatacgtttgtcatgcgttcatccacca 32271508  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 32271511 - 32271466
Alignment:
Q  295 accattatatctaaacactttataattctctatgcatattcaacat 340  Q
    ||||||||||||||||||||||||||||| | | ||||||||||||    
T  32271511 accattatatctaaacactttataattctatgtacatattcaacat 32271466  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 401
Target Start/End: Original strand, 45420990 - 45421036
Alignment:
Q  355 ccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    ||||||| | |||||||||||| |||||||||| |||||||||||||    
T  45420990 ccaaaatgagattatataacaaagcagtccctaaagcacaaggtgtg 45421036  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 10487573 - 10487526
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  10487573 gccaaaatgaaattatataacaatgcagtccctagagcacaaggtgtg 10487526  T

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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 5817848 - 5817801
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5817848 gccaaaataaaattatataacaatgcagtccctagagcacagggtgtg 5817801  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 8655740 - 8655693
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    |||||||| ||||||||||||||||||| || ||||||||||||||||    
T  8655740 gccaaaatgaaattatataacaatgcagcccgtagagcacaaggtgtg 8655693  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 3130645 - 3130598
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    |||||||| |||||||||||||||||||| |||| || ||||||||||    
T  3130645 gccaaaatgaaattatataacaatgcagttcctaaagtacaaggtgtg 3130598  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 47540399 - 47540446
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    |||||||| |||||||||||||||||||||||||  |||||| |||||    
T  47540399 gccaaaatgaaattatataacaatgcagtccctaacgcacaaagtgtg 47540446  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 32004454 - 32004501
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  32004454 gccaaaataaaattatataacaatgcagtccctagagcacaacgtgtg 32004501  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 13447953 - 13448000
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    |||||||| |||||||||| |||||||||||||| |||||||||||||    
T  13447953 gccaaaatgaaattatataccaatgcagtccctaaagcacaaggtgtg 13448000  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 38542883 - 38542836
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||||||    
T  38542883 gccaaaatggaattatataacaaagcagtccctagagcacaaggtgtg 38542836  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 30168014 - 30167967
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    |||||||| | |||||||||||| |||||||||| |||||||||||||    
T  30168014 gccaaaatgagattatataacaaagcagtccctaaagcacaaggtgtg 30167967  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 14366291 - 14366244
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14366291 gccaaaataaaattatataacaatgcaatccctagagcacaaggtgtg 14366244  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 4644486 - 4644533
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||    
T  4644486 gccaaaacgaaattatataacaatgcagtccctagagcacaaggtgtg 4644533  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 21527634 - 21527681
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||    
T  21527634 gccaaaatgaaattatataacagtgcagtccctagagcacaaggtgtg 21527681  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 401
Target Start/End: Complemental strand, 9528417 - 9528373
Alignment:
Q  357 aaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||    
T  9528417 aaaatgaaattatataacaatgcagtccctagagcataaggtgtg 9528373  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 52336136 - 52336183
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    |||||||| ||||||||||||||||||||| ||||||||||| |||||    
T  52336136 gccaaaatgaaattatataacaatgcagtctctagagcacaatgtgtg 52336183  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 36928640 - 36928686
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  36928640 gccaaaatgaaat-atataacaaagcagtccctagagcacaaggtgtg 36928686  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 48266385 - 48266338
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    |||||||| |||||||||||||||||| | |||||||||||| |||||    
T  48266385 gccaaaatgaaattatataacaatgcaattcctagagcacaatgtgtg 48266338  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 401
Target Start/End: Complemental strand, 17921663 - 17921631
Alignment:
Q  369 tataacaatgcagtccctagagcacaaggtgtg 401  Q
    |||||||| ||||||||||||||||||||||||    
T  17921663 tataacaaagcagtccctagagcacaaggtgtg 17921631  T

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Target: scaffold0220 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 22880 - 22833
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||    
T  22880 gccaaaatgaaattatataacaatacagtccctagagcacaaggtgtg 22833  T

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Target: scaffold0029 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 135303 - 135260
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaagg 397  Q
    |||||||| ||||||||||||||||||| |||||||||||||||    
T  135303 gccaaaatgaaattatataacaatgcagcccctagagcacaagg 135260  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 313130 - 313087
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaagg 397  Q
    |||||||| ||||||||||||||||||| |||||||||||||||    
T  313130 gccaaaatgaaattatataacaatgcagcccctagagcacaagg 313087  T

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Target: scaffold0002; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 328584 - 328541
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaagg 397  Q
    |||||||| ||||||||||||||||||| |||||||||||||||    
T  328584 gccaaaatgaaattatataacaatgcagcccctagagcacaagg 328541  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 12531244 - 12531197
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    |||||||||| |||||||||||| ||||||||||||||| ||||||||    
T  12531244 gccaaaataagattatataacaaagcagtccctagagcataaggtgtg 12531197  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 15654374 - 15654327
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    |||||||| | |||||||||||| ||||||||||||||||||||||||    
T  15654374 gccaaaatgagattatataacaaagcagtccctagagcacaaggtgtg 15654327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 19402691 - 19402738
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    |||||||| | |||||||||||| ||||||||||||||||||||||||    
T  19402691 gccaaaatgagattatataacaaagcagtccctagagcacaaggtgtg 19402738  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 9534145 - 9534191
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgt 400  Q
    |||||||| |||||||||||||||  |||||||||||||||||||||    
T  9534145 gccaaaatgaaattatataacaatatagtccctagagcacaaggtgt 9534191  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 21277718 - 21277672
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  21277718 gccaaaatgaaat-atataacaaagcagtccctagagcacaaggtgtg 21277672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 33629572 - 33629619
Alignment:
Q  354 gccaaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    |||||||| |||||||||||||||| |||||||| |||||||||||||    
T  33629572 gccaaaatgaaattatataacaatgtagtccctaaagcacaaggtgtg 33629619  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 401
Target Start/End: Original strand, 1682516 - 1682561
Alignment:
Q  356 caaaataaaattatataacaatgcagtccctagagcacaaggtgtg 401  Q
    |||||| ||||||||| |||||||||| |||| |||||||||||||    
T  1682516 caaaatgaaattatatgacaatgcagtgcctaaagcacaaggtgtg 1682561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 395
Target Start/End: Complemental strand, 48621 - 48583
Alignment:
Q  357 aaaataaaattatataacaatgcagtccctagagcacaa 395  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  48621 aaaatagaattatataacaatgcagtccttagagcacaa 48583  T

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