View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17841_low_28 (Length: 400)
Name: NF17841_low_28
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_low_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 32040065 - 32039701
Alignment:
| Q |
18 |
ttgctacaatcaatttcgtattaataatacatattagtaatatacaatttcgtactaataaactaatgatcataattagtaagatactcaaaggcgatca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32040065 |
ttgctacaatcaatttcgtattaataatacatattagtaatatacaatttcatactaataaactaatgatcataattagtaagatactcaaaggcgatca |
32039966 |
T |
|
| Q |
118 |
aataataactgagccttaagatacaaatacaaatatgaagtttcaactcgctaccaacactggtccgtttcccatttccgacaaccgtaaccagaaaatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32039965 |
aataataactgagccttaagatacaaatacaaatatgaagtttcaactcgctaccaacactggtccgtttcccatttccgacaaccgtaaccagaaaatc |
32039866 |
T |
|
| Q |
218 |
ccgtcaccgtcagcggttgctgttgccggaacaagcttctatcatagctagctcgcttctcaggatccaaaagagtggaatacgcagcatgaatcttcat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32039865 |
ccgtcaccgtcagcggttgctgttgccggaacaagcttctatcatagctagctcgcttctcaggatccaaaagagtggaatacgcagcatgaatcttcat |
32039766 |
T |
|
| Q |
318 |
gaactcatccgccgaagaaaccttccgatcaaccgccgccacatcagggtgggaaaccctggcaa |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32039765 |
gaactcatccgccgaagaaaccttccgatcaaccgccgccacatcagggtgggaaaccctggcaa |
32039701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 369
Target Start/End: Complemental strand, 8707655 - 8707566
Alignment:
| Q |
280 |
ggatccaaaagagtggaatacgcagcatgaatcttcatgaactcatccgccgaagaaaccttccgatcaaccgccgccacatcagggtgg |
369 |
Q |
| |
|
|||||| |||| || ||||| |||| |||||||||||||| ||||||||||| || |||||||||| ||||||||||||||||||| |
|
|
| T |
8707655 |
ggatccgaaagcgtcgaatatgcagagtgaatcttcatgaaatcatccgccgatgagtttttccgatcaatcgccgccacatcagggtgg |
8707566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 365
Target Start/End: Complemental strand, 8695952 - 8695867
Alignment:
| Q |
280 |
ggatccaaaagagtggaatacgcagcatgaatcttcatgaactcatccgccgaagaaaccttccgatcaaccgccgccacatcagg |
365 |
Q |
| |
|
|||||| |||| |||||||| |||| |||||||||||||| ||||||||||| || |||||||||| ||||| |||||||| |
|
|
| T |
8695952 |
ggatccgaaagcgtggaatatgcagagtgaatcttcatgaaatcatccgccgatgagtttttccgatcaattgccgcaacatcagg |
8695867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University