View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_low_29 (Length: 362)
Name: NF17841_low_29
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 339
Target Start/End: Complemental strand, 54490884 - 54490557
Alignment:
| Q |
12 |
caatatcaacatgatccgtaaaatctaatttagtttcaacgggtttttcatcccaaaccctatttttcttaaccacctttttcggctcagccttggttac |
111 |
Q |
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| T |
54490884 |
caatatcaacatgatccgtaaaatctaatttagtttcaacgggtttttcatcccaaaccctatttttcttaaccacctttttcggctcagccttggttac |
54490785 |
T |
|
| Q |
112 |
aacagcatctgttttctttccattcccacctttattcctaaccttcttctggagcctatttacatcaaaagctccattgtttacactatcattctcttta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54490784 |
aacagcatctgttttctttccattcccacctttattcctaaccttcttctggagcctatttacatcaaaagctccattgtttacactatcattctcttta |
54490685 |
T |
|
| Q |
212 |
ccatttacactaacattaccaacaacaccgttactcctcaaattataaccgttaccggtattcacaatagcagaacggtcattctcagaattcttcttcc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
54490684 |
ccatttacactaacattaccaacaacaccgttactcctcaaattataaccgttaccgttattcacaatagcagaacggtcattctcagaattcttcttcc |
54490585 |
T |
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| Q |
312 |
catttttcccatcaccatcattcttcaa |
339 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
54490584 |
catttttcccatcaccatcattcttcaa |
54490557 |
T |
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