View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_low_3 (Length: 700)
Name: NF17841_low_3
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 348 - 682
Target Start/End: Complemental strand, 34771760 - 34771426
Alignment:
| Q |
348 |
ggtaaaagtctatcaagtttggaaagatgtaatgtaacatgtagcatggttgaaatgaacatgatgaacatgaacatgatcatgaaatctaaacacattc |
447 |
Q |
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| T |
34771760 |
ggtaaaagtctatcaagtttggaaagatgtaatgtaacatgtagcatggttgaaatgaacatgatgaacatgaacatgatcatgaaatctaaacacattc |
34771661 |
T |
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| Q |
448 |
caacnnnnnnnncatcaacaatgaaatgtaagaattgattgaagatgaaaataataaataggtaacaaccatcccaaatattagacatttttcttagaag |
547 |
Q |
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| T |
34771660 |
caacaaaaaaaacatcaacaatgaaatgtaagaattgattgaagatgaaaataataaataggtaacaaccatcccaaatattagacatttttcttagaag |
34771561 |
T |
|
| Q |
548 |
ttgaagagttcaaaagcaaaaaacagaagagtgtgaatgtgaatatgcatatgaatgtgtgtgtgttgaagtaacaatatagagagggaagtaacagtaa |
647 |
Q |
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| T |
34771560 |
ttgaagagttcaaaagcaaaaaacagaagagtgtgaatgtgaatatgcatatgaatgtgtgtgtgttgaagtaacaatatagagagggaagtaacagtaa |
34771461 |
T |
|
| Q |
648 |
gaaaaagaggatcaagcaaaaatagatataaatgg |
682 |
Q |
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| T |
34771460 |
gaaaaagaggatcaagcaaaaatagatataaatgg |
34771426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 86 - 281
Target Start/End: Complemental strand, 34772023 - 34771828
Alignment:
| Q |
86 |
gctacttcatcaccagcttccctctcttcttgctgccatgacttttttggcttttcatgattttctttgcaagacaagcaccatccatcattataattgc |
185 |
Q |
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| T |
34772023 |
gctacttcatcaccagcttccctctcttcttgctgccatgacttttttggcttttcatgattttctttgcaagacaagcaccatccatcattataattgc |
34771924 |
T |
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| Q |
186 |
acaagcaggtcatctcatgtctttccctttcataagctgaaacaaaataagattaacaaaattataactcataacaaccaaccatcccagattctc |
281 |
Q |
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| T |
34771923 |
acaagcaggtcatctcatgtctttccctttcataagctgaaacaaaataagattaacaaaattataactcataacaaccaaccatcccagattctc |
34771828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 516 - 593
Target Start/End: Complemental strand, 34781161 - 34781083
Alignment:
| Q |
516 |
ccatcccaaatattagacatttttcttagaagttgaagagttcaaaagcaa-aaaacagaagagtgtgaatgtgaatat |
593 |
Q |
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| T |
34781161 |
ccatcccaaatattagacatttttatcagaagttgaagagttcaaaagcaaaaaaacagaagaatgtaaatgtgaatat |
34781083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 643 - 682
Target Start/End: Complemental strand, 34780958 - 34780919
Alignment:
| Q |
643 |
agtaagaaaaagaggatcaagcaaaaatagatataaatgg |
682 |
Q |
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| T |
34780958 |
agtaagaaaaagaggatcatgcaaaaatagatataaatgg |
34780919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 643 - 682
Target Start/End: Complemental strand, 34795806 - 34795767
Alignment:
| Q |
643 |
agtaagaaaaagaggatcaagcaaaaatagatataaatgg |
682 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |
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| T |
34795806 |
agtaagaaaaagaggatcatgcaaaaatagatataaatgg |
34795767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 579 - 611
Target Start/End: Complemental strand, 34796000 - 34795968
Alignment:
| Q |
579 |
tgtgaatgtgaatatgcatatgaatgtgtgtgt |
611 |
Q |
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| T |
34796000 |
tgtgaatgtgaatatgcatatgaatgtgtgtgt |
34795968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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