View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_low_30 (Length: 357)
Name: NF17841_low_30
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_low_30 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 171 - 348
Target Start/End: Complemental strand, 10720836 - 10720659
Alignment:
| Q |
171 |
tttgacatctgattacctccggaacctatttagttttattataaatttcatacaatcaagtgtttaatcaactattgatggaaaacatgaatttagtcaa |
270 |
Q |
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| T |
10720836 |
tttgatatctgattacctctggaacctatttagttttattataaatttcatacaatcaagtgtttaatcaactattgatggaaaacatgaatttagtcaa |
10720737 |
T |
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| Q |
271 |
cctagttttagaatcataaaaaagttgtagaatcgtatttagcttcattatctatttattacttacactgagaataat |
348 |
Q |
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| T |
10720736 |
cctagttttagaatcataaaaaagttgtagaatcgtatttagcttcattatctatatattacttacactgataataat |
10720659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 10721518 - 10721436
Alignment:
| Q |
18 |
ctaagaaaataaagcactttgtcattggtcaagacaacacataccactttttcattaggcaaaacaatgcatacctcttttat |
100 |
Q |
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| T |
10721518 |
ctaagaaaataaagcactttgtcattggtcaagacaacacataccactttttcattaggcaaaacaatgcatacctcttttat |
10721436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 10720974 - 10720936
Alignment:
| Q |
131 |
accctaaaggttctacgcctcttactgtgttctccttgc |
169 |
Q |
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| T |
10720974 |
accctaaaggttctacgcctcttactgtgttctccttgc |
10720936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 129
Target Start/End: Complemental strand, 10721110 - 10721080
Alignment:
| Q |
99 |
atgttgtcttggccaatagaaaagaggcatg |
129 |
Q |
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| T |
10721110 |
atgttgtcttggccaatagaaaagaggcatg |
10721080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 124512 - 124449
Alignment:
| Q |
34 |
ctttgtcattggtcaagacaacacataccactttttcattaggcaaaacaatgcatacctctttt |
98 |
Q |
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| T |
124512 |
ctttgtcattggtcaagacaacacatgcctcttttt-attagccatgacagtgcatgcctctttt |
124449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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