View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_low_32 (Length: 349)
Name: NF17841_low_32
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 151 - 338
Target Start/End: Original strand, 2213462 - 2213649
Alignment:
| Q |
151 |
tctgtcagtagtccttgttgaatataaagggcaataagttgtttcttgagtgaaactctgtttcatcttttgaatgtctactttctacagtgttctgctt |
250 |
Q |
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| T |
2213462 |
tctgtcagtagtccttgttgaatataaagggcaataagttgtttcttgattgaaactctgtttcatcttttgaatgtctactttctacagtgttctgctt |
2213561 |
T |
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| Q |
251 |
ctattatttattgctcttgtgctttcgcagtgctgttagtggacatccctggtcgccttgttatagtattccttttactagcttcttc |
338 |
Q |
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| T |
2213562 |
ctattatttattgctcttgtgctttcgcagtgctgttagtggacatccctggtcgccttgttatagtattccttttactagcttcttc |
2213649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 151 - 267
Target Start/End: Original strand, 2200811 - 2200932
Alignment:
| Q |
151 |
tctgtcagtagtccttgttgaatataaagggcaataagttgt-----ttcttgagtgaaactctgtttcatcttttgaatgtctactttctacagtgttc |
245 |
Q |
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| T |
2200811 |
tctgtcagtagtccttgttgaatataaagggcaataagttgtgttctttctggattgaaactctgtttcatcttttgaatgtctactttctacggtgttc |
2200910 |
T |
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| Q |
246 |
tgcttctattatttattgctct |
267 |
Q |
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| T |
2200911 |
tgcttctatgatttattgctct |
2200932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 2200681 - 2200739
Alignment:
| Q |
20 |
gccctctctccttaatacaatacattcactctgtttgttgcagattatggtaatatttg |
78 |
Q |
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| T |
2200681 |
gccctctctccttaatacaatacactcactctgtttgttgcggattatggtaatatttg |
2200739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 2213333 - 2213387
Alignment:
| Q |
20 |
gccctctctccttaatacaatacattcactctgtttgttgcagattatggtaatatttg |
78 |
Q |
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| T |
2213333 |
gccctctctccttaatacaatacattcactc----tgttgcagattatggtaatatttg |
2213387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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