View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17841_low_36 (Length: 305)

Name: NF17841_low_36
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17841_low_36
NF17841_low_36
[»] chr7 (3 HSPs)
chr7 (167-294)||(1608831-1608960)
chr7 (175-274)||(2187860-2187960)
chr7 (167-274)||(19632944-19633053)
[»] chr5 (3 HSPs)
chr5 (167-274)||(37806540-37806650)
chr5 (211-274)||(37627431-37627495)
chr5 (180-259)||(33614707-33614785)
[»] chr8 (4 HSPs)
chr8 (175-274)||(29822632-29822733)
chr8 (220-274)||(7094160-7094216)
chr8 (220-274)||(7097893-7097949)
chr8 (220-259)||(45463058-45463097)
[»] chr1 (1 HSPs)
chr1 (175-294)||(41313953-41314075)
[»] chr2 (2 HSPs)
chr2 (220-294)||(19215544-19215620)
chr2 (226-281)||(19589281-19589337)
[»] chr4 (2 HSPs)
chr4 (180-255)||(637728-637803)
chr4 (237-279)||(11992147-11992190)
[»] chr3 (1 HSPs)
chr3 (226-274)||(8377591-8377641)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 167 - 294
Target Start/End: Complemental strand, 1608960 - 1608831
Alignment:
Q  167 caagtgta-attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttta-tttatata 264  Q
    |||||||| |||||||||||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1608960 caagtgtagattcagtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaaggaaaagggcgctccattttttattttatata 1608861  T
Q  265 tgtatttactggttgattgaatgatgatgt 294  Q
    ||||||||||||||| || || ||||||||    
T  1608860 tgtatttactggttgtttaaaggatgatgt 1608831  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 2187860 - 2187960
Alignment:
Q  175 attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttta-tttatatatgtatttac 273  Q
    |||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  2187860 attcagtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaagggaaagggcgctccattttttattttatatatgtatttac 2187959  T
Q  274 t 274  Q
    |    
T  2187960 t 2187960  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 167 - 274
Target Start/End: Complemental strand, 19633053 - 19632944
Alignment:
Q  167 caagtgta-attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttta-tttatata 264  Q
    |||||||| |||||||||||||||||||| ||||| | || ||| |||||||||||||| |||||||||| |||||||||||||||||||| ||||||||    
T  19633053 caagtgtagattcagtggagcaaagaccatgagtataaatattaatagctgctatattgttaaggtaagggaaagggcgctccattttttattttatata 19632954  T
Q  265 tgtatttact 274  Q
    ||||||||||    
T  19632953 tgtatttact 19632944  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 274
Target Start/End: Complemental strand, 37806650 - 37806540
Alignment:
Q  167 caagtgta-attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttt--atttatat 263  Q
    |||||||| |||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||| |||||||||||||||||||   |||||||    
T  37806650 caagtgtagattcagtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaagggaaagggcgctccatttttttattttatat 37806551  T
Q  264 atgtatttact 274  Q
    |||||||||||    
T  37806550 atgtatttact 37806540  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 37627495 - 37627431
Alignment:
Q  211 tagctgctatattgctaaggtaaggaaaagggcgctccatttttta-tttatatatgtatttact 274  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  37627495 tagctgctatattgctaaggtaagggaaagggcgctccattttttattttatatatgtatttact 37627431  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 33614785 - 33614707
Alignment:
Q  180 gtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccattttttattt 259  Q
    ||||||||||||||| | || || |||||| ||||  |||| | |||||||||||||||||||| ||||||| |||||||    
T  33614785 gtggagcaaagaccatgggttgaaatcttaatagcgactatct-gctaaggtaaggaaaagggcactccattatttattt 33614707  T

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Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 29822632 - 29822733
Alignment:
Q  175 attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttt--atttatatatgtattta 272  Q
    ||||||||||||||| ||||||||| || |||||| ||||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||    
T  29822632 attcagtggagcaaataccacgagttgaaatcttaatagctgctatattgctaaggtaagggaaagggcgctccatttttttattttatatatgtattta 29822731  T
Q  273 ct 274  Q
    ||    
T  29822732 ct 29822733  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 7094216 - 7094160
Alignment:
Q  220 tattgctaaggtaaggaaaagggcgctccatttttt--atttatatatgtatttact 274  Q
    ||||| |||||||||| |||||||||||||||||||   ||||||||||||||||||    
T  7094216 tattgttaaggtaagggaaagggcgctccatttttttattttatatatgtatttact 7094160  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 7097949 - 7097893
Alignment:
Q  220 tattgctaaggtaaggaaaagggcgctccatttttt--atttatatatgtatttact 274  Q
    ||||| |||||||||| |||||||||||||||||||   ||||||||||||||||||    
T  7097949 tattgttaaggtaagggaaagggcgctccatttttttattttatatatgtatttact 7097893  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 45463097 - 45463058
Alignment:
Q  220 tattgctaaggtaaggaaaagggcgctccattttttattt 259  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  45463097 tattgctaaggtaagggaaagggcgctccattatttattt 45463058  T

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Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 175 - 294
Target Start/End: Complemental strand, 41314075 - 41313953
Alignment:
Q  175 attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttt---atttatatatgtattt 271  Q
    |||| ||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||| ||| |||||||||||||||    |||||||||||| ||    
T  41314075 attccgtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaagggaaatggcgctccattttttctattttatatatgtagtt 41313976  T
Q  272 actggttgattgaatgatgatgt 294  Q
    ||| |||| |  |||||||||||    
T  41313975 acttgttgttaaaatgatgatgt 41313953  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 19215544 - 19215620
Alignment:
Q  220 tattgctaaggtaaggaaaagggcgctccattttt-ta-tttatatatgtatttactggttgattgaatgatgatgt 294  Q
    ||||| |||||||||| |||||||||||||||||| || |||||||||||||||||| |||| |  |||||||||||    
T  19215544 tattgttaaggtaagggaaagggcgctccatttttctattttatatatgtatttacttgttgttaaaatgatgatgt 19215620  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 281
Target Start/End: Original strand, 19589281 - 19589337
Alignment:
Q  226 taaggtaaggaaaagggcgctccatttttta-tttatatatgtatttactggttgat 281  Q
    |||||||||||||| ||||||||||| |||| ||| ||||||||| |||| ||||||    
T  19589281 taaggtaaggaaaatggcgctccattatttattttttatatgtatctacttgttgat 19589337  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 637728 - 637803
Alignment:
Q  180 gtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttt 255  Q
    |||||||||||||||||||| || ||||||  |||||||   ||| |||||||||| |||| ||||||||| ||||    
T  637728 gtggagcaaagaccacgagttgaaatcttaacagctgctgctttgttaaggtaagggaaagtgcgctccatatttt 637803  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 279
Target Start/End: Complemental strand, 11992190 - 11992147
Alignment:
Q  237 aaagggcgctccatttttta-tttatatatgtatttactggttg 279  Q
    |||||||||||||||||||| |||||||||||||||||| ||||    
T  11992190 aaagggcgctccattttttattttatatatgtatttacttgttg 11992147  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 8377591 - 8377641
Alignment:
Q  226 taaggtaaggaaaagggcgctccatttttt--atttatatatgtatttact 274  Q
    |||||||||| |||||||||||||||||||   ||||||||||||||||||    
T  8377591 taaggtaagggaaagggcgctccatttttttattttatatatgtatttact 8377641  T

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