View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_low_38 (Length: 298)
Name: NF17841_low_38
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 29356196 - 29356453
Alignment:
| Q |
20 |
attccatcatgacctgttttccttgcttatttagcaagacatcgtcttcttcaagacaaaatccagacaatgatgaaggtaagaaaactaacaaattaca |
119 |
Q |
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| T |
29356196 |
attccatcatgacctgttttccttgcttatttagcaagacatcgtcttcttcaagacaaaatccagacaatgatgaaggtaagaaaactaacaaattaca |
29356295 |
T |
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| Q |
120 |
attgataagaccgagctagcgtttcaagggtaatcttgtaagctaaaccgcagtatttaaccctaaccttgaatagtaggcatgcaaccactctatagtc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29356296 |
attgataagaccgagctagcgtttcaagggtaatcttgtaagctaaaccgcagtatttaaccctaaccttgaatagtaggcatgcaaccactctatagtc |
29356395 |
T |
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| Q |
220 |
ggagacatgggcacaattgaccgaaatctattatcaaatttcctgtgttttctgtttg |
277 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29356396 |
ggagacgtggacacaattgaccgaaatctattatcaaatttcctgtgttttctgtttg |
29356453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 29362862 - 29362969
Alignment:
| Q |
20 |
attccatcatgacctgttttccttgcttatttagcaagacatcgtcttcttcaagacaaaatccagacaatgatgaaggtaagaaaactaacaaattaca |
119 |
Q |
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||||| ||||||||||||| |||| || || || |||||| |||||||||||||||| |||||||||| ||||||||||||| |||||||||||| || |
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| T |
29362862 |
attccgtcatgacctgtttccctttctcgttcagtaagacaccgtcttcttcaagacagcatccagacaacgatgaaggtaagataactaacaaattgca |
29362961 |
T |
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| Q |
120 |
attgataa |
127 |
Q |
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|| ||||| |
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| T |
29362962 |
atagataa |
29362969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 25530430 - 25530364
Alignment:
| Q |
210 |
ctctatagtcggagacatgggcacaattgaccgaaatctattatcaaatttcctgtgttttctgttt |
276 |
Q |
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||||| |||||||| ||| || ||||||| ||||| ||| ||||||||| || |||||||||||||| |
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| T |
25530430 |
ctctacagtcggaggcatagggacaattggccgaactctgttatcaaatatcgtgtgttttctgttt |
25530364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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