View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_low_4 (Length: 671)
Name: NF17841_low_4
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 140 - 649
Target Start/End: Complemental strand, 35671530 - 35671019
Alignment:
| Q |
140 |
gagaaaatcaatatttagttgtttgttatatttgttagaggagaagttgcatgaacctatcacctccttatcactccatcaaaccatcatatgacttgcc |
239 |
Q |
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| T |
35671530 |
gagaaaatcaatatttagttgtttgttatatttgttagaggagaagttgcatgaacctatcacctccttatcactccatcaaaccatcatatgacttgcc |
35671431 |
T |
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| Q |
240 |
aagttaattagtcattagttcatgcaatatcttgatagagtt-----gcatccgtattccatatttgagactatctgtgcaaagaaaattttattttatt |
334 |
Q |
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| T |
35671430 |
aagttaattagtcattagttcatgcaatatcttgatagagttgcattgcatccgtattccatatttgagactatctgcgcaaagaaaattttattttatt |
35671331 |
T |
|
| Q |
335 |
atcttagtatgtatgatatacatgtgtatgaaatttttatattacatgaatgaatgaagtttaaatagttctattannnnnnnacttttcaaagcctaaa |
434 |
Q |
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| T |
35671330 |
atcttagtatgtatgatatacatgtgtatgaaatttttatatta----tatgaatgaagtttaaatagttctattatttttttacttttcaaagcctaaa |
35671235 |
T |
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| Q |
435 |
aataac-nnnnnnnntcccacaaagggatatagatggaattgagcaggctctgcaccaaaaataactaaagtttttaaaatagaccatacgaaacaaatg |
533 |
Q |
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| T |
35671234 |
aataacaaaaaaaaatcacacaaagggatatagatggaattgagcaggctctgcaccaaaaataactaaagtttttaaaatagaccatacgaaacaaatg |
35671135 |
T |
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| Q |
534 |
gatctatcacgtgtatannnnnnnnnnnngacgaagtatcacatgtttatttattttatcaaggaataaagcataatttactaactagttagtaatatag |
633 |
Q |
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| T |
35671134 |
gatctatcacgtgtatattttttatttttgacgaagtatcacatgtttatttattttatcaaggaataaagcataatttactaactagttagtaatatag |
35671035 |
T |
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| Q |
634 |
aatgtctctaccatct |
649 |
Q |
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| T |
35671034 |
aatgtctctaccatct |
35671019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 32212007 - 32212067
Alignment:
| Q |
61 |
aactaaaaagacacaagtgaaaattgatttttcattaaaaaaacgttgttgtgattatttag |
122 |
Q |
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| T |
32212007 |
aactaaaaagacacaagtgaaaattgatttttcatt-aaaaaacattgttgtgtttatttag |
32212067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 43439523 - 43439611
Alignment:
| Q |
33 |
tggaattcatgtgcaaaaatgatgttttaactaaaaagacacaagtgaaaattgatttttcattaaaaaaacgttgttgtgattattta |
121 |
Q |
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| T |
43439523 |
tggaattcatgtgcaaaaatgatgttttaactaaaaagacacaagtgaaaattgatttttcattaaaaaaacgttgttgtgattattta |
43439611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 10142701 - 10142757
Alignment:
| Q |
66 |
aaaagacacaagtgaaaattgatttttcattaaaaaaacgttgttgtgattatttag |
122 |
Q |
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| T |
10142701 |
aaaagacacaagtgaaaattgatttttcattaaaaaaatattgttgtgtttatttag |
10142757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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