View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17841_low_40 (Length: 294)
Name: NF17841_low_40
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_low_40 |
 | |
|
| [»] scaffold0115 (1 HSPs) |
| | |
|
| [»] scaffold0192 (1 HSPs) |
| | |
|
| [»] scaffold0417 (1 HSPs) |
| | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
| [»] scaffold0086 (1 HSPs) |
| | |
|
| [»] scaffold0211 (1 HSPs) |
| | |
|
| [»] scaffold0205 (1 HSPs) |
| | |
|
| [»] scaffold0111 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 19605840 - 19605578
Alignment:
| Q |
14 |
atcaccaaaacaacttatttcgaacttcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattag |
113 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| |||||||||||||| |
|
|
| T |
19605840 |
atcaccaaaacaacttatttcgaaattcaactatgaacttgaacatataaacacatcaattccatgaaatttaacatacctgtaactacacataaattag |
19605741 |
T |
|
| Q |
114 |
gagcacgaaattcaacataaaaagtcacaaaagtcaaaatttacaccaaagcacttatggcccaaaagtaaaatgataagaatatagtagcttatttgat |
213 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| || ||||||||||||| |
|
|
| T |
19605740 |
gagcacgaaattcaacataaaaaatcacaaaagtcctcttttacacagaagcacttatggcccaaaagtaaaatgatgagatta---tagcttatttgat |
19605644 |
T |
|
| Q |
214 |
gaaatagttatatcttccttacctcaaagcttcaattcctctagttatggcttcactctcctctct |
279 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
19605643 |
gaaatagttctatctcccttacctcaaagcttcaattcctctaattatggcttcactctcccctct |
19605578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 2493833 - 2493708
Alignment:
| Q |
11 |
aaaatcaccaaaacaacttatttcgaacttcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaat |
110 |
Q |
| |
|
|||| ||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||| | ||| ||||||| ||| |
|
|
| T |
2493833 |
aaaaacaccaaaacaacttatttcaaacatcaactatgaacttgaacatataaacacatcaattccataaaattcaacatactcataattacacatcaat |
2493734 |
T |
|
| Q |
111 |
taggagcacgaaattcaacataaaaa |
136 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
2493733 |
taggagcacgaaaatcaacataaaaa |
2493708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 10112379 - 10112148
Alignment:
| Q |
11 |
aaaatcaccaaaacaacttatttcgaacttcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaat |
110 |
Q |
| |
|
||||||| ||||||||||||||| ||| |||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||| ||| ||||||| ||| |
|
|
| T |
10112379 |
aaaatcattaaaacaacttatttcaaacatcaactttgaacttgaacatataaacacatcaattccctaaaattcaacatacccataactacacatcaat |
10112280 |
T |
|
| Q |
111 |
taggagcacgaaattcaacataaaaagtcacaaaagtcaaaatttacaccaaagcacttatggcccaaaagtaaaatgataagaatatagtagcttattt |
210 |
Q |
| |
|
|||| || | || ||||||| |||| ||| |||| |||||||| |||| ||| |||||| | |||| ||| || || ||| || |||||||||| |
|
|
| T |
10112279 |
caggaacatggaaatcaacatcaaaattcataaaaatcaaaattcacacaaaaacacttaggacccattcgtagaaaaatgagatta---tagcttattt |
10112183 |
T |
|
| Q |
211 |
gatgaaatagttatatcttccttacctcaaagcttc |
246 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||| |
|
|
| T |
10112182 |
gatgaaatagttctatc-cccttacctcaaagcttc |
10112148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 10121221 - 10121298
Alignment:
| Q |
201 |
tagcttatttgatgaaatagttatatcttccttacctcaaagcttcaattcctctagttatggcttcactctcctctct |
279 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||| ||| ||||||||||||||||| ||| |||| |
|
|
| T |
10121221 |
tagcttatttgatgaaatagttctatcc-ccttacctcaaagcttcaaatccactagttatggcttcactatcccctct |
10121298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 36935 - 36676
Alignment:
| Q |
11 |
aaaatcaccaaaacaacttatttcgaacttcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaat |
110 |
Q |
| |
|
|||||||||||||| ||||||||| ||| ||||||||||| ||||||| |||| ||||||||||| ||||||| || |||||| ||| ||||||||||| |
|
|
| T |
36935 |
aaaatcaccaaaaccacttatttcaaacatcaactatgaagttgaacacataaacacatcaattcggtaaaattcaatatacccataactacacataaat |
36836 |
T |
|
| Q |
111 |
taggagcacgaaattcaacataaaaagtcacaaaagtcaaaatttacaccaaagcacttatggcccaaaagtaaaatgataagaatatagtagcttattt |
210 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| || |||| |||| |||||||||||| ||||||||||||| ||| ||| || |||| ||||| |
|
|
| T |
36835 |
taggagcacgaaattcaacatcaaaaatcacaaaattcgtaattcacacaaaagcacttatgacccaaaagtaaaaagatgagatta---tagcatattt |
36739 |
T |
|
| Q |
211 |
gatgaaatagttatatcttccttacctcaaagcttcaattcctctagttatggcttcactctcc |
274 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36738 |
gatgaaataattatatc-cccttacctcaaagcttcaaagtctctagttatggcttcactctcc |
36676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0192 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0192
Description:
Target: scaffold0192; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 13222 - 12957
Alignment:
| Q |
11 |
aaaatcaccaaaacaacttatttcgaacttcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaat |
110 |
Q |
| |
|
||||||| |||| || ||||||| ||| ||||||||||||||||||| |||| |||||||||||||| |||||||||| |||| ||| ||||||||||| |
|
|
| T |
13222 |
aaaatcatcaaagaaaattatttcaaacatcaactatgaacttgaacacataaacacatcaattccatgaaatttaacacacccataattacacataaat |
13123 |
T |
|
| Q |
111 |
taggagcacgaaattcaacataaaaagtcacaaaagtcaaaatttacaccaaagcacttatggcccaaaagtaaaatgataagaatatagtagcttattt |
210 |
Q |
| |
|
||||||||| ||| ||||| | |||| |||||||||||| |||| |||| |||||||||||| | | | | |||| || ||| || || |||| | |
|
|
| T |
13122 |
taggagcacaaaactcaacttcaaaaatcacaaaagtcataattcacacaaaagcacttatgactcctatgaaaaaatatgagatta---taacttacta |
13026 |
T |
|
| Q |
211 |
gatgaaatagttatatcttccttacctcaaagcttcaattcctctagttatggcttcactctcctctct |
279 |
Q |
| |
|
||||||||||| |||| |||||||||||| ||| |||||| ||||||||||||||||||||| |||| |
|
|
| T |
13025 |
aatgaaatagttctatcccccttacctcaaaactttaattccactagttatggcttcactctcccctct |
12957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 11 - 172
Target Start/End: Complemental strand, 14305465 - 14305304
Alignment:
| Q |
11 |
aaaatcaccaaaacaacttatttcgaacttcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaat |
110 |
Q |
| |
|
|||||||||||| |||||| ||| ||| ||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||| |
|
|
| T |
14305465 |
aaaatcaccaaaccaactttttttaaacatcaactacgaacttgaacatataaacacatcaattccataaaatccaacatacccataactacacataaat |
14305366 |
T |
|
| Q |
111 |
taggagcacgaaattcaacataaaaagtcacaaaagtcaaaatttacaccaaagcacttatg |
172 |
Q |
| |
|
||||||| ||||| ||||||| |||| ||| |||| ||| |||| |||| |||||||||||| |
|
|
| T |
14305365 |
taggagcccgaaaatcaacatcaaaaatcataaaaatcataattcacacaaaagcacttatg |
14305304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 170
Target Start/End: Complemental strand, 15045252 - 15045148
Alignment:
| Q |
65 |
cacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtcacaaaagtcaaaatttacaccaaag |
164 |
Q |
| |
|
|||||||||| ||| || |||| ||||||| ||||| |||| ||||| ||||||||||||||||||||||| |||||||| || |||| ||| |||| |
|
|
| T |
15045252 |
cacatcaatttcatgaagtttatcatacccttaaatttacatgaattatgagcacgaaattcaacataaaaa-tcacaaaatccacaattaacataaaag |
15045154 |
T |
|
| Q |
165 |
cactta |
170 |
Q |
| |
|
|||||| |
|
|
| T |
15045153 |
cactta |
15045148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 170
Target Start/End: Complemental strand, 19631951 - 19631864
Alignment:
| Q |
83 |
tttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtcacaaaagtcaaaatttacaccaaagcactta |
170 |
Q |
| |
|
|||| |||||| | |||| ||||| |||||||||||||||||||| || |||| ||||||||| || |||| |||| |||||||||| |
|
|
| T |
19631951 |
tttatcataccagcaaattcacatgaattaggagcacgaaattcattatcaaaaatcacaaaagccacaattaacacaaaagcactta |
19631864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 21 - 245
Target Start/End: Original strand, 22545915 - 22546135
Alignment:
| Q |
21 |
aaacaacttatttcgaacttcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacg |
120 |
Q |
| |
|
||||||||||||| ||| ||||| |||||||||||| |||| ||||||| |||||| ||||||||||||||| || |||||||||||||||||||| | |
|
|
| T |
22545915 |
aaacaacttattttaaacatcaacaatgaacttgaacgcataaacacatca-ttccatgaaatttaacatacccatatatacacataaattaggagcatg |
22546013 |
T |
|
| Q |
121 |
aaattcaacataaaaagtcacaaaagtcaaaatttacaccaaagcacttatggcccaaaagtaaaatgataagaatatagtagcttatttgatgaaatag |
220 |
Q |
| |
|
||||||||||| | || | || | ||||| |||| |||| |||||||||||| || |||||||||| ||| ||| || ||||||||||||||||| | |
|
|
| T |
22546014 |
aaattcaacatcataaattactatagtcataattcacacaaaagcacttatgaccgaaaagtaaaaagatgagatta---tagcttatttgatgaaaatg |
22546110 |
T |
|
| Q |
221 |
ttatatcttccttacctcaaagctt |
245 |
Q |
| |
|
| |||| |||||||||||||||| |
|
|
| T |
22546111 |
tactatcccccttacctcaaagctt |
22546135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 17913669 - 17913764
Alignment:
| Q |
11 |
aaaatcaccaaaacaacttatttcgaacttcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacat |
106 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||| |||||||||| |||||||||||||| ||||||||||||||| ||| ||||||| |
|
|
| T |
17913669 |
aaaatcaccaaaacaacttatttcaaacatcaactatgaactcgaacatataaacacatcaattccatgaaatttaacatacccataactacacat |
17913764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 12602888 - 12602805
Alignment:
| Q |
40 |
tcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaa |
123 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||||||| |||||||| |||||| || ||| |||||||||||||||||||||||| |
|
|
| T |
12602888 |
tcaaccatgaacttgaacatgtaaacacatcaattctataaaattcaacatatccataactacacataaattaggagcacgaaa |
12602805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 12463748 - 12463615
Alignment:
| Q |
11 |
aaaatcaccaaaacaacttatttcgaacttcaactatgaacttgaa-catataatcacatcaattccataaaatttaacatacccgtaaatacacataaa |
109 |
Q |
| |
|
||||||||||||||||||||| | ||| |||||||||| || || | |||| || ||||||||| | || ||||||||||| ||| |||||||||| |
|
|
| T |
12463748 |
aaaatcaccaaaacaacttatcactaacaacaactatgaattttaagcccataa-catatcaattccttgaagtttaacatacca-taattacacataaa |
12463651 |
T |
|
| Q |
110 |
ttaggagcacgaaattcaacataaaaagtcacaaaa |
145 |
Q |
| |
|
||| |||||||| ||||| ||| |||| |||||||| |
|
|
| T |
12463650 |
ttaagagcacgatattcatcattaaaaatcacaaaa |
12463615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 279
Target Start/End: Original strand, 20114279 - 20114367
Alignment:
| Q |
191 |
aagaatatagtagcttatttgatgaaatagttatatcttccttacctcaaagcttcaattcctctagttatggcttcactctcctctct |
279 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| ||||||||| ||| |||||| | |||||| ||||||||||||| |||| |
|
|
| T |
20114279 |
aagaatattatagcttatttgatgaaatagaactatcctccttaccttaaaccttcaaatttactagtttaggcttcactctcccctct |
20114367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 177
Target Start/End: Original strand, 3662 - 3828
Alignment:
| Q |
11 |
aaaatcaccaaaacaacttatttcgaacttcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaat |
110 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||| ||| || ||||||||| || | | |||||||||| |
|
|
| T |
3662 |
aaaatcaccaaaacaacttatcaccaacaacaactatgaacttgaacatataaacacatcaatttcatgaagtttaacatatccattataacacataaat |
3761 |
T |
|
| Q |
111 |
taggagcacgaaattcaacataaaaagtcacaaaagtcaaaatttacaccaaagcacttatggccca |
177 |
Q |
| |
|
|| |||||||||||||| ||| |||| |||||||||||| |||| | || |||||||||||| |||| |
|
|
| T |
3762 |
taagagcacgaaattcatcatcaaaaatcacaaaagtcataattaatacaaaagcacttatgaccca |
3828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 6460161 - 6459898
Alignment:
| Q |
11 |
aaaatcaccaaaacaacttatttcgaacttcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaat |
110 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| |||||||||||||||||| || |||||||||||||||| |||||||| ||| ||| ||| ||| |
|
|
| T |
6460161 |
aaaatcaccaaaacaacttatttcaaacatcaaccatgaacttgaacatataaatacctcaattccataaaattcaacatacctataactacccatcaat |
6460062 |
T |
|
| Q |
111 |
taggagcacgaaattcaacataaaaagtcacaaaagtcaaaatttacaccaaagcacttatggcccaaaagtaaaatgataagaatatagtagcttattt |
210 |
Q |
| |
|
||| |||| |||| || |||||| || | | |||| ||| |||| |||| |||||||||||| |||| ||||| | | |||||| || ||| ||||| |
|
|
| T |
6460061 |
tagaagcatgaaaatccacataagaaattataaaaatcataattcacacgaaagcacttatgacccataagtaga---aaaagaat-ta-tagtttattc |
6459967 |
T |
|
| Q |
211 |
gatgaaatagttatatcttccttacctcaaagcttcaattcctctagttatggcttcactctcctctct |
279 |
Q |
| |
|
|||||| || |||| ||||||||||||||||||| | | ||||||||| |||||||||||||||| |
|
|
| T |
6459966 |
gatgaagtataattatcccccttacctcaaagcttcaaattcactagttatgacttcactctcctctct |
6459898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 17913146 - 17913271
Alignment:
| Q |
11 |
aaaatcaccaaaacaacttatttcgaacttcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaat |
110 |
Q |
| |
|
||||| |||||||||||||||| | ||| | |||||||||||||||||||||| ||| ||||| ||||||||| || |||||| ||| ||||||| || |
|
|
| T |
17913146 |
aaaattaccaaaacaacttattacaaacataaactatgaacttgaacatataaacacttcaatctcataaaattgaatatacccataattacacatcaaa |
17913245 |
T |
|
| Q |
111 |
taggagcacgaaattcaacataaaaa |
136 |
Q |
| |
|
||||||||| || | |||||||||| |
|
|
| T |
17913246 |
taggagcacttaaattaacataaaaa |
17913271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 17161277 - 17161182
Alignment:
| Q |
41 |
caactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaa |
136 |
Q |
| |
|
|||||||||| || | || |||| || ||||||||||| || |||||||||||| ||| ||||||||||||| |||||||||| ||| ||| |||| |
|
|
| T |
17161277 |
caactatgaatttaagcacataaacatatcaattccatgaagtttaacatacccataattacacataaattaagagcacgaaagtcatcatcaaaa |
17161182 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 16176659 - 16176703
Alignment:
| Q |
230 |
ccttacctcaaagcttcaattcctctagttatggcttcactctcc |
274 |
Q |
| |
|
||||||||||||||||||| | | ||||||||| ||||||||||| |
|
|
| T |
16176659 |
ccttacctcaaagcttcaaattccctagttatgccttcactctcc |
16176703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 17913333 - 17913409
Alignment:
| Q |
201 |
tagcttatttgatgaaatagttatatcttccttacctcaaagcttcaattcctctagttatggcttcactctcctct |
277 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| ||| |||||| ||||| || |||||||||||||||| |
|
|
| T |
17913333 |
tagcttatttgatgaaatagtactatcccccttaccttaaaccttcaaaatctctattttaggcttcactctcctct |
17913409 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 106028 - 105862
Alignment:
| Q |
11 |
aaaatcaccaaaacaacttatttcgaacttcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaat |
110 |
Q |
| |
|
||||| ||||||||||||||||| ||| | || |||||||||||||| |||| || ||||||||| ||||||| ||||||||| ||| ||| ||| ||| |
|
|
| T |
106028 |
aaaattaccaaaacaacttattttaaacatgaattatgaacttgaacacataaacatatcaattccttaaaattcaacatacccataattactcattaat |
105929 |
T |
|
| Q |
111 |
taggagcacgaaattcaacataaaaagtcacaaaagtcaaaatttacaccaaagcacttatggccca |
177 |
Q |
| |
|
||||||||| ||| ||||||||||| ||| ||| ||| |||| |||| |||||||||||| |||| |
|
|
| T |
105928 |
taggagcacaaaaaccaacataaaaaatcatgaaaatcataattcacacaaaagcacttatgaccca |
105862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 220
Target Start/End: Complemental strand, 9817 - 9627
Alignment:
| Q |
27 |
cttatttcgaacttcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattc |
126 |
Q |
| |
|
|||||||| ||| |||||||| ||||||||||||||| ||| |||||||||||||||| ||||||| | ||| ||||||| || |||||||||| || || |
|
|
| T |
9817 |
cttatttcaaacatcaactataaacttgaacatataaacacctcaattccataaaattcaacatacacataattacacatcaactaggagcacggaaatc |
9718 |
T |
|
| Q |
127 |
aacataaaaagtcacaaaagtcaaaatttacaccaaagcacttatggcccaaaagtaaaatgataagaatatagtagcttatttgatgaaatag |
220 |
Q |
| |
|
|||||| ||| ||| |||| || |||| | || |||||||||||| |||| || || | | ||||| || |||||||||||||||||||| |
|
|
| T |
9717 |
aacatacaaaatcataaaaatcttaattcatacaaaagcacttatgacccataaataga---aaaagaagattatagcttatttgatgaaatag |
9627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 279
Target Start/End: Complemental strand, 29614736 - 29614501
Alignment:
| Q |
31 |
tttcgaacttcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaaca |
130 |
Q |
| |
|
|||| ||| |||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| ||| ||| ||| || ||||||||||||| | |||| |
|
|
| T |
29614736 |
tttcaaacatcaactatgaacttgaacatctaaacacatcaattccatgaaatttaacatacccataattacccatcaactaggagcacgaaaattaaca |
29614637 |
T |
|
| Q |
131 |
taaaaagtcacaaaagtcaaaatttacaccaaagcacttatggcccaaaagtaaaatgataagaatatagtagcttatttgatgaaatagttatatcttc |
230 |
Q |
| |
|
| |||| ||| |||| |||| |||||||||||| |||| ||||| || || || || | ||||||||| |||||||||||||| | |
|
|
| T |
29614636 |
tcaaaa----------tcataattcacacgaaagcacttatgacccataagtagaaaaatgagggta---tggcttatttgttgaaatagttatatgccc |
29614550 |
T |
|
| Q |
231 |
cttacctcaaagcttcaattcctctagttatggcttcactctcctctct |
279 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||||| |||||| |||| |
|
|
| T |
29614549 |
cttaactcaaagcttcaaagccactagttatggcttcgctctcccctct |
29614501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 21912 - 22028
Alignment:
| Q |
20 |
aaaacaacttatttcgaacttcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcac |
119 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||| ||||||| ||| ||||||||| | || || |||||| || ||||||| |||| | ||||| |
|
|
| T |
21912 |
aaaacaacttatttcaaacatcaactatgaacttgagcatataaacacttcaattccacatgtttcaaaatacccatacctacacatcaatttgaagcac |
22011 |
T |
|
| Q |
120 |
gaaattcaacataaaaa |
136 |
Q |
| |
|
|||| | |||||||||| |
|
|
| T |
22012 |
gaaaattaacataaaaa |
22028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 26132733 - 26132811
Alignment:
| Q |
14 |
atcaccaaaacaacttatttcgaacttcaactatgaacttgaacatataatcacatcaattccataaaatttaacatac |
92 |
Q |
| |
|
|||||||||| ||||||| | ||| ||||||| ||||||||||| |||| ||||| |||||||| ||||||||||||| |
|
|
| T |
26132733 |
atcaccaaaataacttatcacaaacatcaactacgaacttgaacacataaacacattaattccatgaaatttaacatac |
26132811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 41 - 145
Target Start/End: Original strand, 13457050 - 13457153
Alignment:
| Q |
41 |
caactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtca |
140 |
Q |
| |
|
|||||||||| || | || |||| || ||||||||||| || |||| ||||||| ||| |||||||||| || |||||| ||||||| |||||||| ||| |
|
|
| T |
13457050 |
caactatgaatttaagcacataaacatatcaattccatgaagtttaccatacccataattacacataaa-taagagcactaaattcatcataaaaaatca |
13457148 |
T |
|
| Q |
141 |
caaaa |
145 |
Q |
| |
|
||||| |
|
|
| T |
13457149 |
caaaa |
13457153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 17364276 - 17364353
Alignment:
| Q |
68 |
atcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtcacaaaa |
145 |
Q |
| |
|
||||||| ||| || |||| ||| ||| ||||| ||||| ||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
17364276 |
atcaatttcatgaagtttatcatgcccataaattcacatgaattaagagcacgaaattcatcataaaaaatcacaaaa |
17364353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 16107375 - 16107424
Alignment:
| Q |
230 |
ccttacctcaaagcttcaattcctctagttatggcttcactctcctctct |
279 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||| |||| |
|
|
| T |
16107375 |
ccttacctcaaagcttcaaaatctctagttgtggcttcactctcccctct |
16107424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 26727854 - 26727927
Alignment:
| Q |
97 |
aaatacacataaattaggagcacgaaattcaacataaaaagtcacaaaagtcaaaatttacaccaaagcactta |
170 |
Q |
| |
|
|||| ||||| |||||||||||||||| ||| ||| ||| |||||||||||| |||| ||| |||||||||| |
|
|
| T |
26727854 |
aaattcacatgaattaggagcacgaaactcatcatcgaaaatcacaaaagtcacaattaacataaaagcactta |
26727927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 1111 - 1022
Alignment:
| Q |
65 |
cacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtcacaaaagtcaaaatt |
154 |
Q |
| |
|
||||| |||| |||||| |||| | ||||| ||||| ||||| ||||| ||| |||||||||| ||| |||| |||||||||||| |||| |
|
|
| T |
1111 |
cacattaatttcataaattttatcgtacccataaattcacatgaattaagagtacgaaattcatcatcaaaattcacaaaagtcacaatt |
1022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 30312 - 30180
Alignment:
| Q |
11 |
aaaatcaccaaaacaacttatttcgaacttcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaat |
110 |
Q |
| |
|
||||||| ||||||||||||| | ||| |||||||||| || | || |||| || |||||||| || || ||||||||| || ||| |||||| |||| |
|
|
| T |
30312 |
aaaatcatcaaaacaacttatcaccaacaacaactatgaatttaagcacataaacatatcaattctatgaagtttaacatagccataattacacacaaat |
30213 |
T |
|
| Q |
111 |
taggagcacgaaattcaacataaaaagtcacaa |
143 |
Q |
| |
|
|| |||| ||||||| |||||||| |||||| |
|
|
| T |
30212 |
taaaagcaaaaaattcatcataaaaaatcacaa |
30180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 21719735 - 21719865
Alignment:
| Q |
11 |
aaaatcaccaaaacaacttatttcgaacttcaactatgaacttgaa-catataatcacatcaattccataaaatttaacatacccgtaaatacacataaa |
109 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||| || || || |||| |||| ||||| ||| || |||| |||||| |||| ||||| || |
|
|
| T |
21719735 |
aaaatcaccaaaacaacttatcaacaacaacaactatgaagtttaagcacataa-cacaacaatttcatgaagtttatcatacctacaaattcacatgaa |
21719833 |
T |
|
| Q |
110 |
ttaggagcacgaaattcaacataaaaagtcac |
141 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| |
|
|
| T |
21719834 |
ttaggagcacgaaattcatcataaaaaatcac |
21719865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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