View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_low_42 (Length: 290)
Name: NF17841_low_42
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 34437657 - 34437434
Alignment:
| Q |
16 |
attccaatcaaacaatctagaccgtcctattaagatcgtacatctcagttgacttattaattggtatcgggcaaggaccgactaatctagcggcacaatc |
115 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34437657 |
attccaatcaaacaatctagaccgacctattaagatcgtacatctcagttgacttattaattggtatcgggcaaggaccgactaatctagcggaacaatc |
34437558 |
T |
|
| Q |
116 |
cctggtactttgatttataaatatagtatgatggtctggattgcatgtctatagcatttgagtaaactttcagatagtataaatagtacaaaagagtggc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437557 |
cctggtactttgatttataaatatagtatgatggtctggattgcatgtctatagcatttgagtaaactttcagatagtataaatagtacaaaagagtggc |
34437458 |
T |
|
| Q |
216 |
taattcctaagtagaactgatact |
239 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
34437457 |
taattcctaagtagaactgatact |
34437434 |
T |
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