View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_low_43 (Length: 288)
Name: NF17841_low_43
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 35592595 - 35592842
Alignment:
| Q |
1 |
tttagtctctaccttttgtcaaacatggagactaaaaacaaataaaattccatagcgactaaactcagaagatagatattttagagactaaaaacatatt |
100 |
Q |
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||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35592595 |
tttagtctccaccttttgtcaaacatggagtctaaaaacaaataaaattccatagcgacaaaactcagaagatagatattttagagactaaaaacatatt |
35592694 |
T |
|
| Q |
101 |
aacacacgttttcttagggcctagcatgcaagttatgcataatgtaatgtttgtgtgttttcatctcccagaatcagatcaaataattatacttaccgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
35592695 |
aacacacgttttcttagggcctagcatgcaagttatgcataatgtaatgtttgtgtgttttcatctcccagattcagatcaaataattatacttaccaat |
35592794 |
T |
|
| Q |
201 |
taccattaccaatcacaaaaaaccatcacattaagttatgccatatat |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35592795 |
taccattaccaatcacaaaaaaccatcacattaagttatgccatatat |
35592842 |
T |
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