View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17841_low_44 (Length: 285)

Name: NF17841_low_44
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17841_low_44
NF17841_low_44
[»] chr5 (2 HSPs)
chr5 (68-269)||(42554130-42554331)
chr5 (71-269)||(28220908-28221106)
[»] chr8 (3 HSPs)
chr8 (75-269)||(43745789-43745980)
chr8 (68-217)||(43430956-43431099)
chr8 (123-202)||(12529881-12529960)
[»] chr7 (21 HSPs)
chr7 (120-269)||(8647711-8647860)
chr7 (123-269)||(7876777-7876923)
chr7 (113-265)||(3148374-3148526)
chr7 (91-269)||(6790391-6790569)
chr7 (70-269)||(8630188-8630387)
chr7 (71-269)||(8655310-8655508)
chr7 (114-269)||(8584479-8584634)
chr7 (78-265)||(13332097-13332284)
chr7 (71-269)||(8668426-8668624)
chr7 (114-269)||(1302315-1302470)
chr7 (114-269)||(8660248-8660403)
chr7 (78-269)||(10492944-10493135)
chr7 (113-269)||(17269103-17269259)
chr7 (113-215)||(17261395-17261497)
chr7 (123-208)||(8591411-8591496)
chr7 (123-208)||(8602747-8602832)
chr7 (74-265)||(27829292-27829483)
chr7 (123-199)||(8582676-8582752)
chr7 (123-202)||(8546688-8546767)
chr7 (114-196)||(8104069-8104151)
chr7 (120-262)||(8610674-8610816)
[»] chr1 (3 HSPs)
chr1 (71-269)||(4677483-4677681)
chr1 (119-269)||(15596068-15596218)
chr1 (79-269)||(34465191-34465381)
[»] chr4 (5 HSPs)
chr4 (71-268)||(9323008-9323205)
chr4 (71-268)||(9377487-9377684)
chr4 (71-268)||(9334980-9335176)
chr4 (71-268)||(30776078-30776275)
chr4 (113-269)||(35133457-35133613)
[»] chr2 (10 HSPs)
chr2 (71-268)||(16661010-16661207)
chr2 (72-269)||(43626282-43626479)
chr2 (113-269)||(16656543-16656699)
chr2 (79-209)||(12257917-12258047)
chr2 (79-269)||(7543246-7543436)
chr2 (79-213)||(12235767-12235901)
chr2 (79-269)||(14705432-14705622)
chr2 (120-213)||(12000343-12000436)
chr2 (120-269)||(12244346-12244495)
chr2 (14-51)||(13080671-13080708)
[»] chr6 (1 HSPs)
chr6 (71-265)||(28911275-28911461)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 68 - 269
Target Start/End: Complemental strand, 42554331 - 42554130
Alignment:
Q  68 gattagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaa 167  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42554331 gattagaaatgtaccaaagacagtgttttgggggttggtggcggtttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaa 42554232  T
Q  168 gaaggtgttgttttgttgccttcatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtcta 267  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42554231 gaaggtgttgttttgttgccttgatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtcta 42554132  T
Q  268 tt 269  Q
    ||    
T  42554131 tt 42554130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 71 - 269
Target Start/End: Original strand, 28220908 - 28221106
Alignment:
Q  71 tagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaa 170  Q
    ||||||| ||||||||||  | |||||||||||| ||||  ||||||  ||||||||||| |||||||||||||||| ||  || |||||||||||||||    
T  28220908 tagaaatttaccaaagacggtattttgggggttgttggccgtttgatttttagcagcatcgccaatcaacctttcatcatcggtgaaagcaacaaaagaa 28221007  T
Q  171 ggtgttgttttgttgccttcatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
    || |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| |||||||| |||||| ||||||||||||||||| ||||||    
T  28221008 ggagttgttttgttgccttgatcattgtgaataatctcaaccctattgtgttcatcttgccacacagcaacacatgaatacgttgttccaagatctatt 28221106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 75 - 269
Target Start/End: Original strand, 43745789 - 43745980
Alignment:
Q  75 aatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtg 174  Q
    |||||||||||||   ||||||| |||||||||||| |||||| ||||||||| ||||| |||||||||||||||| ||||||||||||||||||||       
T  43745789 aatgtaccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaag--- 43745885  T
Q  175 ttgttttgttgccttcatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  43745886 ttgttttgttgccttgatcattgtgaataatctcaactctattttgttcatcttgccacacagcaacacacgaatacgttgttccaaggtctatt 43745980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 217
Target Start/End: Original strand, 43430956 - 43431099
Alignment:
Q  68 gattagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaa 167  Q
    ||||| |||||||||||||||  ||||||| |||||||||||| |||||| | | ||||||| ||| ||      ||||| ||  |||||||||||||||    
T  43430956 gattaaaaatgtaccaaagacggtgttttgagggttggtggcggtttgattcatggcagcattaccgat------ttcatcatcggtaaaagcaacaaaa 43431049  T
Q  168 gaaggtgttgttttgttgccttcatcattgtgaataatctcaactctatt 217  Q
     |  |||||||||| ||||||| ||||||||||| ||||| |||||||||    
T  43431050 aagagtgttgttttattgccttgatcattgtgaaaaatctgaactctatt 43431099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 12529881 - 12529960
Alignment:
Q  123 gcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaat 202  Q
    ||||||| ||||||||| || | |  || ||||||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  12529881 gcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 12529960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 120 - 269
Target Start/End: Original strand, 8647711 - 8647860
Alignment:
Q  120 ttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaactctatttt 219  Q
    ||||| ||||||||||||||||||| || ||  || |||||||||||||||||||| ||| |||| |||| ||||||||||||||||||||||||||| |    
T  8647711 ttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaaagaaggtgtagttctgtttccttgatcattgtgaataatctcaactctattgt 8647810  T
Q  220 gttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
    |||||||   |||||||| |||||||||||||||||||||||||||||||    
T  8647811 gttcatcaagccacacagcaacacacgaatacgttgttccaaggtctatt 8647860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 123 - 269
Target Start/End: Complemental strand, 7876923 - 7876777
Alignment:
Q  123 gcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaactctattttgtt 222  Q
    |||||||||||||||||||||| || ||  || |||||||||||||||||||||||| |||||||||  |||||||||||||| || |||||||| ||||    
T  7876923 gcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgttgttctgttgccttgttcattgtgaataatttcgactctattgtgtt 7876824  T
Q  223 catcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
    ||||   |||||||| |||||| ||||||||||||||||||||||||    
T  7876823 catcaagccacacagcaacacaggaatacgttgttccaaggtctatt 7876777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 113 - 265
Target Start/End: Original strand, 3148374 - 3148526
Alignment:
Q  113 ttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaact 212  Q
    ||||| ||||||||||||||||| |||||||| || || ||| |||||||||||||||||||| |||||||||||||  |||||||||||||||||||||    
T  3148374 ttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctcaact 3148473  T
Q  213 ctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtc 265  Q
    || || || |||||   ||| |||| ||| |||||||||||||||||||||||    
T  3148474 ctgttgtgctcatcgagccaaacagcaacgcacgaatacgttgttccaaggtc 3148526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 91 - 269
Target Start/End: Original strand, 6790391 - 6790569
Alignment:
Q  91 tgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttc 190  Q
    ||||||| |||||||||||   ||||| ||||||||||||||| ||||||||||  | ||  || |||||||||||||||||||| |||||||| ||||     
T  6790391 tgttttgcgggttggtggcagcttgatacttagcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtggttttgttaccttg 6790490  T
Q  191 atcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
     |||||||||||||||||||||||||| ||||||||   |||||||  |||||| ||||| |||||||| |||||||||    
T  6790491 gtcattgtgaataatctcaactctattgtgttcatcaagccacacaccaacacaagaatatgttgttcccaggtctatt 6790569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 70 - 269
Target Start/End: Original strand, 8630188 - 8630387
Alignment:
Q  70 ttagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaaga 169  Q
    |||||||| ||||||||||| ||||||| |||||| ||||    ||||||||||||||| |||||| |||||||| || ||  ||||||||||| || ||    
T  8630188 ttagaaatataccaaagacagtgttttgtgggttgatggcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacgaagga 8630287  T
Q  170 aggtgttgttttgttgccttcatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
    ||||||  |||| |||||||||||||||||||||||||||||||| || | ||| ||   ||| |||  |||||| ||||| ||||||||||||||||||    
T  8630288 aggtgtgattttattgccttcatcattgtgaataatctcaactctgttcttttcttccaaccaaacaccaacacaagaataggttgttccaaggtctatt 8630387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 71 - 269
Target Start/End: Original strand, 8655310 - 8655508
Alignment:
Q  71 tagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaa 170  Q
    ||||||| ||||||| ||| |||||| ||||||||| ||   ||||| || |||  |||  ||||||||||||| || || ||| |||||||||| ||||    
T  8655310 tagaaatttaccaaatacagtgttttcggggttggtagcagattgattctcagctccattgccaatcaacctttgataatcagtgaaagcaacaacagaa 8655409  T
Q  171 ggtgttgttttgttgccttcatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
    ||||| ||| | ||||||| ||||||||||||||||||||||||||| || || ||   |||||||| |||||| ||||| |||||||| |||||||||    
T  8655410 ggtgtagttctattgccttgatcattgtgaataatctcaactctattgtgatcgtcaagccacacagcaacacatgaataggttgttccgaggtctatt 8655508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 114 - 269
Target Start/End: Complemental strand, 8584634 - 8584479
Alignment:
Q  114 tgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaactc 213  Q
    ||||||||||||||| |||||| |||||||| || ||  |||||||||||||| ||||||||  |||| ||||||||||| |||||||||||||||||||    
T  8584634 tgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacaaaggaaggtgtgattttattgccttcatcgttgtgaataatctcaactc 8584535  T
Q  214 tattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
    | || | ||| ||   ||| |||  |||||| ||||| ||||||||||||||||||    
T  8584534 tgttcttttcttccaaccaaacaccaacacaagaataggttgttccaaggtctatt 8584479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 265
Target Start/End: Complemental strand, 13332284 - 13332097
Alignment:
Q  78 gtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttg 177  Q
    |||||||||| | ||||||  ||||| |||||   ||||| ||| ||||||||||||||||| |||| || ||   | |||||||||||||||||||| |    
T  13332284 gtaccaaagatagtgttttcagggttagtggcagattgattcttggcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtag 13332185  T
Q  178 ttttgttgccttcatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtc 265  Q
    || | || |||| |||||||||||||||||||||||| |  ||||||||   |||||||| |||||| || || ||||||||||||||    
T  13332184 ttctatttccttgatcattgtgaataatctcaactctttggtgttcatcaagccacacagcaacacatgagtaggttgttccaaggtc 13332097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 71 - 269
Target Start/End: Original strand, 8668426 - 8668624
Alignment:
Q  71 tagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaa 170  Q
    ||||||| ||||||||| | ||||||  ||||| || ||   ||||| |||||||||||| |||||||||||||  | ||   | |||||||||||||||    
T  8668426 tagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcgccaatcaacctttgttcattgttgaaagcaacaaaagaa 8668525  T
Q  171 ggtgttgttttgttgccttcatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
    |||||| ||  ||| |||| |||||||||||||||||||||||| |  |||| |||   |||||||| |||||| ||||| ||||||||||| ||||||    
T  8668526 ggtgttattcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacatgaataggttgttccaagatctatt 8668624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 269
Target Start/End: Original strand, 1302315 - 1302470
Alignment:
Q  114 tgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaactc 213  Q
    |||| ||||||||||||||| |||||||||| || ||  || |||||||||||||| |||||||||||||||||||  || ||||  || ||||| ||||    
T  1302315 tgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactc 1302414  T
Q  214 tattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
    |||| || |  ||   |||||||| |||||||||||| || |||||||||||||||    
T  1302415 tattgtgattctccagccacacagcaacacacgaataagtagttccaaggtctatt 1302470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 269
Target Start/End: Original strand, 8660248 - 8660403
Alignment:
Q  114 tgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaactc 213  Q
    |||| |||||||||||||||||||||||||| ||  | ||| ||||||||||| ||||||||||||||||| ||||  || ||||  || ||||| ||||    
T  8660248 tgattcttagcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgttttgtttccttggtcgttgtagatgatctcgactc 8660347  T
Q  214 tattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
     ||| || |  ||   |||||||| |||||||||||| ||||||||||||||||||    
T  8660348 gattgtgattctccagccacacagcaacacacgaataggttgttccaaggtctatt 8660403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 269
Target Start/End: Complemental strand, 10493135 - 10492944
Alignment:
Q  78 gtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttg 177  Q
    |||||||||||  ||||||  ||||| |||||   ||||| ||||||||||||||| |||||||||| || ||   | |||||||||||||||||||| |    
T  10493135 gtaccaaagacggtgttttcagggttagtggcagattgattcttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtag 10493036  T
Q  178 ttttgttgccttcatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
    || | || |||| ||||||||||||||| |||||||| |  ||||||||   ||| |||| |||||| || || ||||||||||| ||||||    
T  10493035 ttctatttccttgatcattgtgaataatttcaactctttggtgttcatcaagccatacagcaacacatgagtaggttgttccaagatctatt 10492944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 269
Target Start/End: Original strand, 17269103 - 17269259
Alignment:
Q  113 ttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaact 212  Q
    ||||| |||||| | |||||| || ||||||||||  | || ||||||||||||||| || || ||||||||||||| ||||||||| ||||||||||||    
T  17269103 ttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaaagacggagtagttttgttgccttgatcattgtgtataatctcaact 17269202  T
Q  213 ctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
    |||   ||||| || | |||||||| |||||| || || || || ||||||||||||    
T  17269203 ctaccgtgttcttcatgccacacagcaacacatgagtatgtcgtcccaaggtctatt 17269259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 113 - 215
Target Start/End: Original strand, 17261395 - 17261497
Alignment:
Q  113 ttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaact 212  Q
    ||||| |||||| |||||||| |||||||||||||  | || |||||||||||||||||| ||  ||||||| |||| |||||||||||| |||||||||    
T  17261395 ttgattcttagcggcatcaccgatcaacctttcatctttagcaaaagcaacaaaagaaggagtaattttgtttccttgatcattgtgaatgatctcaact 17261494  T
Q  213 cta 215  Q
    |||    
T  17261495 cta 17261497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 8591411 - 8591496
Alignment:
Q  123 gcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctc 208  Q
    |||||||||||||||||||||| || || ||||||||||||||||||||||||  || | || |||| ||||||||||||||||||    
T  8591411 gcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaagaaggtgtaattctatttccttgatcattgtgaataatctc 8591496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 8602747 - 8602832
Alignment:
Q  123 gcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctc 208  Q
    ||||||||||| |||||||||| || || ||||||||||||||||||||| || ||| |||| |||| ||||||||||||||||||    
T  8602747 gcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctc 8602832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 265
Target Start/End: Complemental strand, 27829483 - 27829292
Alignment:
Q  74 aaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggt 173  Q
    |||| ||||||||| | ||||||| |||||||  ||   ||| | |||||||||||||||||||||||| |  |  |  || ||||||||| ||||||||    
T  27829483 aaatataccaaagatagtgttttgagggttggaagcagcttggttcttagcagcatcaccaatcaacctctgtttgtccgtgaaagcaacacaagaaggt 27829384  T
Q  174 gttgttttgttgccttcatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtc 265  Q
    ||||| ||||||||||  ||||||||||||||||| ||||| || |||| ||| | |||| | | ||| ||||| |||||||| || |||||    
T  27829383 gttgtcttgttgccttgttcattgtgaataatctccactctgttgtgttgatcctgccacgctgcaacgcacgagtacgttgtacctaggtc 27829292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 8582676 - 8582752
Alignment:
Q  123 gcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtg 199  Q
    ||||||||||||||||| |||| |  || ||||||||||||| ||||||||||||||||||| |||| |||||||||    
T  8582676 gcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtg 8582752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 8546688 - 8546767
Alignment:
Q  123 gcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaat 202  Q
    |||||||||||||||| |||||    ||  || ||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  8546688 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 8546767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 8104069 - 8104151
Alignment:
Q  114 tgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcatt 196  Q
    |||| ||||||||||||||| ||||||||||||  || ||| ||||||||| |||| ||||| ||| |||| |||| ||||||    
T  8104069 tgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggtgtcgttctgttcccttgatcatt 8104151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 262
Target Start/End: Original strand, 8610674 - 8610816
Alignment:
Q  120 ttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaactctatttt 219  Q
    |||||||||||||| |||||||||| || |  ||  ||||||||||||||||| || ||| |||| ||||  ||||| || || |||||| |||| || |    
T  8610674 ttagcagcatcacctatcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctcagctctgttgt 8610773  T
Q  220 gttcatcttcccacacagtaacacacgaatacgttgttccaag 262  Q
     ||  || | ||| |||| |||||| ||||| |||||||||||    
T  8610774 tttgttcctgccatacagcaacacatgaataggttgttccaag 8610816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 71 - 269
Target Start/End: Complemental strand, 4677681 - 4677483
Alignment:
Q  71 tagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaa 170  Q
    ||||||| ||||||||||| ||||||  | |||||||||   ||||| ||||||||||| |||||||||||||| || || |||||||||||||||||||    
T  4677681 tagaaatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcatcagtaaaagcaacaaaagaa 4677582  T
Q  171 ggtgttgttttgttgccttcatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
    |||||||||||||||||||  ||||||| ||||||||| ||||| || || |  ||   |||||||| |||||| ||||| || |||||||| ||||||    
T  4677581 ggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctatt 4677483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 119 - 269
Target Start/End: Original strand, 15596068 - 15596218
Alignment:
Q  119 cttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaactctattt 218  Q
    |||||||||||||||||||||||||| || || ||| |||| |||||||||||||||  || |||| ||||  |||||||| |||||||| ||||||||     
T  15596068 cttagcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtggataatctcgactctattc 15596167  T
Q  219 tgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
    ||||||||   |||||||| |||||| ||||||||||||||||||||||||    
T  15596168 tgttcatcaagccacacagcaacacaagaatacgttgttccaaggtctatt 15596218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 79 - 269
Target Start/End: Complemental strand, 34465381 - 34465191
Alignment:
Q  79 taccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgt 178  Q
    ||||||| ||| |||| || |||||||| ||  |||||| ||||||||||| ||| ||||| |||| || ||||||||||||||||||||||||||| ||    
T  34465381 taccaaaaacagtgttctgtgggttggtagcagtttgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtgtggt 34465282  T
Q  179 tttgttgccttcatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
    | |||| ||||  ||||||| ||||||||| |||||| | ||||  || | ||| || | |||||| || || ||||| ||||||||||||    
T  34465281 tgtgttaccttggtcattgtcaataatctctactctactgtgttgttcctgccatactgcaacacatgagtaggttgtgccaaggtctatt 34465191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 268
Target Start/End: Complemental strand, 9323205 - 9323008
Alignment:
Q  71 tagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaa 170  Q
    ||||||| ||||||||| | ||||||  ||||| || ||   ||||| ||||||||||||||||||||||||||  | ||   | |||||||||||||||    
T  9323205 tagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaa 9323106  T
Q  171 ggtgttgttttgttgccttcatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctat 268  Q
    |||||||||  ||| |||| |||||||||||||||||||||||| |  |||| |||   |||||||| |||||| ||||| ||||||||||| |||||    
T  9323105 ggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaagatctat 9323008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 268
Target Start/End: Complemental strand, 9377684 - 9377487
Alignment:
Q  71 tagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaa 170  Q
    ||||||| ||||||||| | ||||||  ||||| || ||   ||||| ||||||||||||||||||||||||||  | ||   | |||||||||||||||    
T  9377684 tagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaa 9377585  T
Q  171 ggtgttgttttgttgccttcatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctat 268  Q
    |||||||||  ||| |||| |||||||||||||||||||||||| |  |||| |||   |||||||| |||||| ||||| ||||||||||| |||||    
T  9377584 ggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaagatctat 9377487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 268
Target Start/End: Complemental strand, 9335176 - 9334980
Alignment:
Q  71 tagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaa 170  Q
    ||||||| ||||||||| | ||||||  ||||| || ||   ||||| |||||||||||||||| |||||||||  | ||   | |||||||||||||||    
T  9335176 tagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcacca-tcaacctttgctcattgttgaaagcaacaaaagaa 9335078  T
Q  171 ggtgttgttttgttgccttcatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctat 268  Q
    |||||||||  ||| |||| |||||||||||||||||||||||| |  |||| |||   |||||||| |||||| ||||| ||||||||||| |||||    
T  9335077 ggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaagatctat 9334980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 268
Target Start/End: Original strand, 30776078 - 30776275
Alignment:
Q  71 tagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaa 170  Q
    ||||||| ||||||||||| ||||||| |||||| | ||    || |||||||||||| |||| | |||||||| |  || ||| |||||||||||||||    
T  30776078 tagaaatttaccaaagacagtgttttgagggttgatagcagcctggtccttagcagcagcaccgaccaacctttgaccatcagtgaaagcaacaaaagaa 30776177  T
Q  171 ggtgttgttttgttgccttcatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctat 268  Q
    |||||  ||||| |||||||||| ||||| ||||| |||||||| ||||  || ||   ||| ||||  |||||||| ||||||||||||||||||||    
T  30776178 ggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaacagccacacacgagtacgttgttccaaggtctat 30776275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 269
Target Start/End: Original strand, 35133457 - 35133613
Alignment:
Q  113 ttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaact 212  Q
    ||||| ||||||||||||||| |||||||||| ||  | ||| ||||||| | ||||||||||||||||||||| || ||| |||||||| || || |||    
T  35133457 ttgattcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaaggtgttgttttgttgctttgatcgttgtgaatgatttcgact 35133556  T
Q  213 ctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
    | ||  ||||  |||| ||| || | |||||| |||||||||||||| |||||||||    
T  35133557 cgatagtgttgttcttgccatactgcaacacatgaatacgttgttccgaggtctatt 35133613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 71 - 268
Target Start/End: Complemental strand, 16661207 - 16661010
Alignment:
Q  71 tagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaa 170  Q
    ||||||| || |||||||  ||||||| |||||| | ||   |||||||||||||||| |||| | |||||||| |  || |||||||||||||||||||    
T  16661207 tagaaatatagcaaagacggtgttttgtgggttgatagcagcttgatccttagcagcaccaccgaccaacctttgagcatcagtaaaagcaacaaaagaa 16661108  T
Q  171 ggtgttgttttgttgccttcatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctat 268  Q
    |||||  |||||||||||||||| ||||| |||||||||||||| ||||  || ||   ||| |||| |||||| || || |||||||| ||||||||    
T  16661107 ggtgtaattttgttgccttcatcgttgtggataatctcaactctgtttttctcttccaaccaaacagcaacacatgagtatgttgttcctaggtctat 16661010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 72 - 269
Target Start/End: Original strand, 43626282 - 43626479
Alignment:
Q  72 agaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaag 171  Q
    |||||| ||||||||||| |||||| ||||| || ||    |||| |||||||||||||||||||||||||||  |  | ||| |||| |||||||||||    
T  43626282 agaaatttaccaaagacagtgttttcggggtcggaggtagcttgacccttagcagcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaag 43626381  T
Q  172 gtgttgttttgttgccttcatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
    |||| ||| |||| ||||  |||||||| |||||||| |||||  | | ||||||   |||||||| || ||| ||||||||||||||||||||||||    
T  43626382 gtgtagttctgtttccttggtcattgtggataatctctactcttctgttttcatcaagccacacagcaatacaagaatacgttgttccaaggtctatt 43626479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 269
Target Start/End: Complemental strand, 16656699 - 16656543
Alignment:
Q  113 ttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaact 212  Q
    ||||| ||||||||||||||| |||||||||| || |||||| |||||||||||||||||||||||| |||| || |  |||||||| || |||||  ||    
T  16656699 ttgattcttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccctggtcattgtgtatgatctctgct 16656600  T
Q  213 ctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
    || || ||    ||   |||||||| |||||| ||||| ||||||||||||||||||    
T  16656599 ctgttgtgacggtccatccacacagcaacacatgaataagttgttccaaggtctatt 16656543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 12258047 - 12257917
Alignment:
Q  79 taccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgt 178  Q
    ||||||||||| ||| ||| |||||||  ||   ||||| |||||||||||||||||||||||||| ||  | ||||||||||||| ||||||| |||||    
T  12258047 taccaaagacagtgtgttgagggttggcagcagcttgattcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgt 12257948  T
Q  179 tttgttgccttcatcattgtgaataatctca 209  Q
    | |||| |||| ||| |||||||| ||||||    
T  12257947 tctgtttccttgatcgttgtgaatgatctca 12257917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 79 - 269
Target Start/End: Original strand, 7543246 - 7543436
Alignment:
Q  79 taccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgt 178  Q
    ||||||||||| ||||||| |||||||  ||   ||||| |||||||  |||||| |||||||| | ||  |  || |||||||||||||||||||||||    
T  7543246 taccaaagacagtgttttgagggttggaagcagcttgattcttagcattatcaccgatcaacctctgattttcggtgaaagcaacaaaagaaggtgttgt 7543345  T
Q  179 tttgttgccttcatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
    | |||||||||  || |||||||| || ||||||| ||  |||| ||| | ||| || | |||||| || |||||||| ||||||||||||    
T  7543346 tctgttgccttggtcgttgtgaatgatttcaactcgatagtgttgatcctgccatactgcaacacaagagtacgttgtgccaaggtctatt 7543436  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 79 - 213
Target Start/End: Original strand, 12235767 - 12235901
Alignment:
Q  79 taccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgt 178  Q
    ||||||||||  ||||||| |||||||  ||   ||||| |||||||||||||||||||||||| | ||  |  || ||||||||||||||||| |||||    
T  12235767 taccaaagacggtgttttgcgggttggaagcagcttgattcttagcagcatcaccaatcaacctctgattttcggtgaaagcaacaaaagaaggggttgt 12235866  T
Q  179 tttgttgccttcatcattgtgaataatctcaactc 213  Q
    | | ||||||| ||| |||||||| ||||||||||    
T  12235867 tctattgccttgatcgttgtgaatgatctcaactc 12235901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 269
Target Start/End: Original strand, 14705432 - 14705622
Alignment:
Q  79 taccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgt 178  Q
    ||||||||||| ||||| | |||||||  ||   ||||| |||||||||||||||||||||||  | ||  |  || ||||||||||||||||| |||||    
T  14705432 taccaaagacagtgtttcgagggttggcagcagcttgattcttagcagcatcaccaatcaaccgctgattttcggtgaaagcaacaaaagaaggagttgt 14705531  T
Q  179 tttgttgccttcatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
    | | ||||||| ||| |||||||| || ||||||| ||  ||||  || | ||| || | |||||| || |||||||| ||||||||||||    
T  14705532 tctattgccttgatcgttgtgaatgatttcaactcgataatgttgttcctgccatactgcaacacatgagtacgttgtaccaaggtctatt 14705622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 12000343 - 12000436
Alignment:
Q  120 ttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaactc 213  Q
    ||||||||||||||||  ||||||| ||  | ||| ||||||||| ||||||||||| |||||||||||| ||| |||||||| || |||||||    
T  12000343 ttagcagcatcaccaacaaacctttgattttcagtgaaagcaacacaagaaggtgttattttgttgccttgatcgttgtgaatgatttcaactc 12000436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 269
Target Start/End: Complemental strand, 12244495 - 12244346
Alignment:
Q  120 ttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaactctatttt 219  Q
    ||||||||||||||||| ||||||| ||  | ||| ||||||||| |||||||||||||| ||||||| | ||| |||||||| || ||||| | |   |    
T  12244495 ttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtgttgttctgttgccctgatcgttgtgaatgatttcaacacgagagt 12244396  T
Q  220 gttcatcttcccacacagtaacacacgaatacgttgttccaaggtctatt 269  Q
    |||  || | ||| || | |||||| ||||||||||| ||||||||||||    
T  12244395 gttgttcctgccatactgcaacacatgaatacgttgtaccaaggtctatt 12244346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 13080708 - 13080671
Alignment:
Q  14 tactactttaaatttgcactacattattaacaacgcac 51  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13080708 tactactttaaatttgcactacattattaacaacgcac 13080671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 265
Target Start/End: Original strand, 28911275 - 28911461
Alignment:
Q  71 tagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaa 170  Q
    ||||||| |||| || ||| |||||| ||||||||||||    |||| |||||||||||||||||||||||||| || ||  || ||||         ||    
T  28911275 tagaaatatacctaaaacagtgttttcggggttggtggcagcctgattcttagcagcatcaccaatcaacctttgatcatcggtgaaag---------aa 28911365  T
Q  171 ggtgttgtttt-gttgccttcatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtc 265  Q
    ||||| ||||| |||||||| ||||||||||||||| | ||||| ||| ||||||||   |||||||  ||||| | |||||||| ||||||||||    
T  28911366 ggtgtagtttttgttgccttgatcattgtgaataatattaactccattgtgttcatcaagccacacaccaacactcaaatacgttattccaaggtc 28911461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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