View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17841_low_45 (Length: 274)

Name: NF17841_low_45
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17841_low_45
NF17841_low_45
[»] chr2 (3 HSPs)
chr2 (17-260)||(8019968-8020211)
chr2 (176-259)||(22391337-22391420)
chr2 (21-79)||(22391574-22391632)
[»] chr3 (30 HSPs)
chr3 (157-260)||(28132157-28132260)
chr3 (157-259)||(27975560-27975662)
chr3 (157-260)||(28510616-28510719)
chr3 (157-259)||(28053683-28053785)
chr3 (157-259)||(28064108-28064210)
chr3 (157-260)||(28147941-28148044)
chr3 (157-259)||(28183975-28184077)
chr3 (160-260)||(28002385-28002485)
chr3 (157-260)||(28481444-28481547)
chr3 (157-260)||(28081950-28082053)
chr3 (157-259)||(28159411-28159513)
chr3 (157-259)||(28035636-28035738)
chr3 (157-259)||(27918580-27918682)
chr3 (157-260)||(27460990-27461090)
chr3 (157-259)||(11418939-11419041)
chr3 (19-81)||(28159634-28159696)
chr3 (210-259)||(17746167-17746216)
chr3 (210-259)||(19047487-19047536)
chr3 (18-88)||(28148170-28148242)
chr3 (19-80)||(28184199-28184260)
chr3 (28-155)||(28035806-28035932)
chr3 (23-83)||(28481226-28481286)
chr3 (23-83)||(28510407-28510467)
chr3 (19-86)||(28053934-28054000)
chr3 (19-86)||(28064359-28064425)
chr3 (23-79)||(28082191-28082247)
chr3 (217-259)||(12146232-12146274)
chr3 (210-260)||(27392230-27392280)
chr3 (28-158)||(28002553-28002682)
chr3 (18-82)||(27460800-27460864)
[»] scaffold0257 (3 HSPs)
scaffold0257 (157-259)||(17537-17639)
scaffold0257 (122-158)||(17704-17740)
scaffold0257 (55-87)||(17766-17798)
[»] chr7 (2 HSPs)
chr7 (18-83)||(8693152-8693216)
chr7 (157-260)||(8693277-8693380)
[»] scaffold0043 (1 HSPs)
scaffold0043 (176-260)||(54687-54771)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 8020211 - 8019968
Alignment:
Q  17 aatatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagccaaacttgctagcatataaaccattaatatca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020211 aatatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagccaaacttgctagcatataaaccattaatatca 8020112  T
Q  117 aatatgaagtctgctgttgatgctgaagccagggatagttttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020111 aatatgaagtctgctgttgatgctgaagccagggatagttttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcac 8020012  T
Q  217 cttcacttacaaatatttcctctagctcatatgcttctcttatg 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  8020011 cttcacttacaaatatttcctctagctcatatgcttctcttatg 8019968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 259
Target Start/End: Complemental strand, 22391420 - 22391337
Alignment:
Q  176 tacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctcttat 259  Q
    ||||||||| |||||||| || |  ||||| |||||| |  |||||| |||||||||||||||||||| ||||||||| |||||    
T  22391420 tacaacttttagatttggcatattgactttctgatcaccttcttcacatacaaatatttcctctagcttatatgcttcacttat 22391337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 22391632 - 22391574
Alignment:
Q  21 tgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtacc 79  Q
    |||||||| ||||||||||| |||||||| ||| |||||||||| | | ||||||||||    
T  22391632 tgtaattaattacagccaacatgtaatagatttcaaaaatattggacaaagtgtgtacc 22391574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 9e-45; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 157 - 260
Target Start/End: Complemental strand, 28132260 - 28132157
Alignment:
Q  157 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||    
T  28132260 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctaactcgtctgcttctct 28132161  T
Q  257 tatg 260  Q
    ||||    
T  28132160 tatg 28132157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 157 - 259
Target Start/End: Complemental strand, 27975662 - 27975560
Alignment:
Q  157 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 256  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  27975662 ttggtagattttcaaatattacaactatcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcagctgcttctct 27975563  T
Q  257 tat 259  Q
    |||    
T  27975562 tat 27975560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 28510616 - 28510719
Alignment:
Q  157 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 256  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  28510616 ttggtagattttcaaatattacaagttttagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctaactcatctgcttctct 28510715  T
Q  257 tatg 260  Q
    ||||    
T  28510716 tatg 28510719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 157 - 259
Target Start/End: Complemental strand, 28053785 - 28053683
Alignment:
Q  157 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 256  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  28053785 ttggtagattttcaaatactacaagttttagatttggaatctccactttgtgatcatcactttcacttacaaatatttcctctagctcatctgcttctct 28053686  T
Q  257 tat 259  Q
    |||    
T  28053685 tat 28053683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 157 - 259
Target Start/End: Complemental strand, 28064210 - 28064108
Alignment:
Q  157 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 256  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  28064210 ttggtagattttcaaatactacaagttttagatttggaatctccactttgtgatcatcactttcacttacaaatatttcctctagctcatctgcttctct 28064111  T
Q  257 tat 259  Q
    |||    
T  28064110 tat 28064108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 157 - 260
Target Start/End: Complemental strand, 28148044 - 28147941
Alignment:
Q  157 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 256  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||| |||||||||    
T  28148044 ttggtagattttcaaatattacaagttttagatttggaatctccactttgtgatcatcaaattcacttacaaatatttcctctaactcatctgcttctct 28147945  T
Q  257 tatg 260  Q
    ||||    
T  28147944 tatg 28147941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 157 - 259
Target Start/End: Complemental strand, 28184077 - 28183975
Alignment:
Q  157 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 256  Q
    |||||||||||||||||| ||||  ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  28184077 ttggtagattttcaaatactacacattctagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctccagctcatctgcttctct 28183978  T
Q  257 tat 259  Q
    |||    
T  28183977 tat 28183975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 28002485 - 28002385
Alignment:
Q  160 gtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctcttat 259  Q
    ||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| | ||||||||||||    
T  28002485 gtagattttcaaatactacaaattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctacctcgtctgcttctcttat 28002386  T
Q  260 g 260  Q
    |    
T  28002385 g 28002385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 28481444 - 28481547
Alignment:
Q  157 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 256  Q
    |||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| | ||| | |||||||||    
T  28481444 ttggtagattttcaaatactacaaattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctcgaactcgtctgcttctct 28481543  T
Q  257 tatg 260  Q
    ||||    
T  28481544 tatg 28481547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 157 - 260
Target Start/End: Complemental strand, 28082053 - 28081950
Alignment:
Q  157 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 256  Q
    |||| ||||||||||||| ||||| |   |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||    
T  28082053 ttggaagattttcaaatactacaaatcgtagatatggaatctccactttgtgatcatcaccttcgcttacaaatatttcctctaactcatctgcttctct 28081954  T
Q  257 tatg 260  Q
    ||||    
T  28081953 tatg 28081950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 157 - 259
Target Start/End: Complemental strand, 28159513 - 28159411
Alignment:
Q  157 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 256  Q
    |||||||||||||||||| ||||  ||  ||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||| || ||||||    
T  28159513 ttggtagattttcaaatactacacattctagatttggaatcttcactttctgatcatcaccttcaattacaaatatttcctctagctcatctgattctct 28159414  T
Q  257 tat 259  Q
    |||    
T  28159413 tat 28159411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 157 - 259
Target Start/End: Complemental strand, 28035738 - 28035636
Alignment:
Q  157 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 256  Q
    |||||||||||||||| | ||||| ||| |||||||||||||||||||| |||||||||||||||||| |||||||||| || | || || |||||||||    
T  28035738 ttggtagattttcaaacactacaaattttagatttggaatctccactttctgatcatcaccttcacttgcaaatatttcttccatcttatctgcttctct 28035639  T
Q  257 tat 259  Q
    |||    
T  28035638 tat 28035636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 259
Target Start/End: Complemental strand, 27918682 - 27918580
Alignment:
Q  157 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 256  Q
    |||||||||||||||||| || |  ||  |||||||||||||||||||| ||||||||||||||| || |||||||||| || ||||||| |||||||||    
T  27918682 ttggtagattttcaaatactagatattctagatttggaatctccactttctgatcatcaccttcatttgcaaatatttcatccagctcatctgcttctct 27918583  T
Q  257 tat 259  Q
    |||    
T  27918582 tat 27918580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 27460990 - 27461090
Alignment:
Q  157 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 256  Q
    ||||||||||| |||||| ||||| ||| |||||||||||||||| ||| ||||||||   |||||||||||||||||||||||||||   |||||||||    
T  27460990 ttggtagatttacaaatactacaagttttagatttggaatctccagtttctgatcatctttttcacttacaaatatttcctctagctc---tgcttctct 27461086  T
Q  257 tatg 260  Q
    ||||    
T  27461087 tatg 27461090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 157 - 259
Target Start/End: Complemental strand, 11419041 - 11418939
Alignment:
Q  157 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 256  Q
    |||| ||||||||||||| || || ||| ||||| ||||||||   ||| |||| |||| |||||||||||||||||||||||||||||| ||| |||||    
T  11419041 ttggcagattttcaaatactaaaaatttaagattcggaatctcgcttttctgatgatcatcttcacttacaaatatttcctctagctcatctgcgtctct 11418942  T
Q  257 tat 259  Q
    |||    
T  11418941 tat 11418939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 28159696 - 28159634
Alignment:
Q  19 tatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgt 81  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||    
T  28159696 tatgtaataatttacagcaaacatgtaatagtttttaaaaatattggatagagtgtgtaccgt 28159634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 17746167 - 17746216
Alignment:
Q  210 tcatcaccttcacttacaaatatttcctctagctcatatgcttctcttat 259  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17746167 tcatcaccttcacttccaaatatttcctctagctcatatgcttctcttat 17746216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 19047487 - 19047536
Alignment:
Q  210 tcatcaccttcacttacaaatatttcctctagctcatatgcttctcttat 259  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19047487 tcatcaccttcacttccaaatatttcctctagctcatatgcttctcttat 19047536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 28148242 - 28148170
Alignment:
Q  18 atatgtaattatttacagccaacgtgtaatagtttttaaaa--atattgtatagagtgtgtaccgtagccaaa 88  Q
    |||||||||||||||| |||||| |||||||||||||||||  |||||| ||||||| |||||||||||||||    
T  28148242 atatgtaattatttacggccaacatgtaatagtttttaaaaatatattggatagagtctgtaccgtagccaaa 28148170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 28184260 - 28184199
Alignment:
Q  19 tatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccg 80  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  28184260 tatgtaataatttacagcaaacatgtaatagtttttaaaaatattggatagagtgtgtaccg 28184199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 28035932 - 28035806
Alignment:
Q  28 atttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagccaaacttgctagcatataaaccattaatatcaaatatgaagtc 127  Q
    ||||||||||||| | |||||||||| |||||||||| |||||||| ||||||||| |||||| || || ||||||||||  |||||||  |   ||||     
T  28035932 atttacagccaacatttaatagtttt-aaaaatattggatagagtgcgtaccgtagtcaaactcgccagaatataaaccagaaatatcattttcaaagtt 28035834  T
Q  128 tgctgttgatgctgaagccagggatagt 155  Q
    || |||||||| ||||||||| ||||||    
T  28035833 tgttgttgatgatgaagccagagatagt 28035806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 28481226 - 28481286
Alignment:
Q  23 taattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtag 83  Q
    |||| ||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||    
T  28481226 taataatttacagccaacatgtaatagttttaaaaaatattggatagaatgtgtaccgtag 28481286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 28510407 - 28510467
Alignment:
Q  23 taattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtag 83  Q
    |||| ||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||    
T  28510407 taataatttacagccaacatgtaatagttttaaaaaatattggatagaatgtgtaccgtag 28510467  T

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Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 28054000 - 28053934
Alignment:
Q  19 tatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagcca 86  Q
    |||||||| ||||||||||||| | ||||||||||||| ||||||| |||||||||||||| ||||||    
T  28054000 tatgtaataatttacagccaacat-taatagtttttaagaatattggatagagtgtgtaccatagcca 28053934  T

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Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 28064425 - 28064359
Alignment:
Q  19 tatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagcca 86  Q
    |||||||| ||||||||||||| | ||||||||||||| ||||||| |||||||||||||| ||||||    
T  28064425 tatgtaataatttacagccaacat-taatagtttttaagaatattggatagagtgtgtaccatagcca 28064359  T

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Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 28082247 - 28082191
Alignment:
Q  23 taattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtacc 79  Q
    |||| |||||||| |||| ||||||||||||||||||||||| ||||| ||||||||    
T  28082247 taataatttacagtcaacatgtaatagtttttaaaaatattggatagaatgtgtacc 28082191  T

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Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 12146274 - 12146232
Alignment:
Q  217 cttcacttacaaatatttcctctagctcatatgcttctcttat 259  Q
    |||||| ||||||||||||||||||||||| ||||||||||||    
T  12146274 cttcacatacaaatatttcctctagctcatttgcttctcttat 12146232  T

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Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 27392230 - 27392280
Alignment:
Q  210 tcatcaccttcacttacaaatatttcctctagctcatatgcttctcttatg 260  Q
    |||||| |||| | ||||||||||||||||||||||| |||||||||||||    
T  27392230 tcatcaacttcgcatacaaatatttcctctagctcatctgcttctcttatg 27392280  T

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Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 28002682 - 28002553
Alignment:
Q  28 atttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtagccaaacttgctagcatataaaccattaatatcaaatatgaagtc 127  Q
    ||||||||||||| | |||||||||| |||||||||| |||||||||||||| | | |||||  |   | |  |||||||  |||||||  |  ||||||    
T  28002682 atttacagccaacatttaatagtttt-aaaaatattggatagagtgtgtaccctcgtcaaaccagaccgaacgtaaaccagaaatatcattttcgaagtc 28002584  T
Q  128 tgctgttgatgctgaagccagggatagtttt 158  Q
    ||||||||||||||||| ||| |||||||||    
T  28002583 tgctgttgatgctgaagtcagagatagtttt 28002553  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 27460800 - 27460864
Alignment:
Q  18 atatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgta 82  Q
    ||||| || |||||||||||||| ||||||  |||| | ||| |||| |||||||||||||||||    
T  27460800 atatgcaaatatttacagccaacatgtaatgattttcagaaagattggatagagtgtgtaccgta 27460864  T

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Target: scaffold0257 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 157 - 259
Target Start/End: Complemental strand, 17639 - 17537
Alignment:
Q  157 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 256  Q
    |||||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||| |||||||||    
T  17639 ttggtagattttcaaatactacaaattttagatttggaatctccattttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctct 17540  T
Q  257 tat 259  Q
    |||    
T  17539 tat 17537  T

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Target: scaffold0257; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 17740 - 17704
Alignment:
Q  122 gaagtctgctgttgatgctgaagccagggatagtttt 158  Q
    |||||||| |||||||||||||||||| |||||||||    
T  17740 gaagtctggtgttgatgctgaagccagagatagtttt 17704  T

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Target: scaffold0257; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 17798 - 17766
Alignment:
Q  55 aaaaatattgtatagagtgtgtaccgtagccaa 87  Q
    |||||||||| ||||||||||||||||||||||    
T  17798 aaaaatattggatagagtgtgtaccgtagccaa 17766  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 8693152 - 8693216
Alignment:
Q  18 atatgtaattatttacagccaacgtgtaatagtttttaaaaatattgtatagagtgtgtaccgtag 83  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||    
T  8693152 atatgtaattatttacagccaacgtgtaatag-tttaaaaaatattggatagagtgtgtaccgtag 8693216  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 8693277 - 8693380
Alignment:
Q  157 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct 256  Q
    |||| ||||||||||||| ||||  ||  |||||||||||||| ||||| | ||||  |||||||||| |||||||||| || ||||||| |||||||||    
T  8693277 ttggaagattttcaaatactacatattctagatttggaatctcgactttctcatcacgaccttcacttgcaaatatttcatccagctcatctgcttctct 8693376  T
Q  257 tatg 260  Q
    ||||    
T  8693377 tatg 8693380  T

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Target: scaffold0043 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 54687 - 54771
Alignment:
Q  176 tacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctcttatg 260  Q
    ||||||||||||||||||||  |  ||||| |||||| |  |||||| ||||||||||||||||||||||| |||||||||||||    
T  54687 tacaactttcagatttggaagattgactttctgatcaccttcttcacatacaaatatttcctctagctcatgtgcttctcttatg 54771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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