View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_low_55 (Length: 244)
Name: NF17841_low_55
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_low_55 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 12379562 - 12379788
Alignment:
| Q |
20 |
agttgcacgatggcaaaagatattactattaggattaggatacgcaaatataattatgatgattggacatcacaatccacaccatttactctaatcattg |
119 |
Q |
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| T |
12379562 |
agttgcacgatggaaaaagatattactattaggattaggatgcgcaaatataattatgatgattggacatcacaatccacaccatttactctaatcattg |
12379661 |
T |
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| Q |
120 |
attaacac--agcaattaagttcaaatggttaattagttccacaaaagatgaattgtttaggagaatttaagtttgattttaagtggaataattttttac |
217 |
Q |
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| T |
12379662 |
attaacacatagcaattcggttcaaatggttaattagtttcacaaaagatgaattatttaggaaaatctaagtttgattttaagtggaataattctggac |
12379761 |
T |
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| Q |
218 |
cacactttatttatcgtctatccgaac |
244 |
Q |
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| T |
12379762 |
cacactttatttaccttctatccgaac |
12379788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 12383629 - 12383855
Alignment:
| Q |
20 |
agttgcacgatggcaaaagatattactattaggattaggatacgcaaatataattatgatgattggacatcacaatccacaccatttactctaatcattg |
119 |
Q |
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| T |
12383629 |
agttgcacgatggaaaaagatattactattaggattaggatgcgcaaatataattatgatgattggacatcacaatccacaccatttactctaatcattg |
12383728 |
T |
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| Q |
120 |
attaacac--agcaattaagttcaaatggttaattagttccacaaaagatgaattgtttaggagaatttaagtttgattttaagtggaataattttttac |
217 |
Q |
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| T |
12383729 |
attaacacatagcaattcggttcaaatggttaattagtttcacaaaagatgaattatttaggaaaatctaagtttgattttaagtggaataattctggac |
12383828 |
T |
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| Q |
218 |
cacactttatttatcgtctatccgaac |
244 |
Q |
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| T |
12383829 |
cacactttatttaccttctatccgaac |
12383855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 137 - 240
Target Start/End: Original strand, 12362708 - 12362811
Alignment:
| Q |
137 |
gttcaaatggttaattagttccacaaaagatgaattgtttaggagaatttaagtttgattttaagtggaataattttttaccacactttatttatcgtct |
236 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| || |||| |||||||||| | ||| |
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| T |
12362708 |
gttcaaatggttaattagttccacaaaagatgaattgcttaggagaatctaagtttgattttaagtggaataattcttgaccatactttatttaccttct |
12362807 |
T |
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| Q |
237 |
atcc |
240 |
Q |
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|||| |
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| T |
12362808 |
atcc |
12362811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 137 - 240
Target Start/End: Original strand, 12379060 - 12379163
Alignment:
| Q |
137 |
gttcaaatggttaattagttccacaaaagatgaattgtttaggagaatttaagtttgattttaagtggaataattttttaccacactttatttatcgtct |
236 |
Q |
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| T |
12379060 |
gttcaaatggttaattagttccacaaaagatgaattgcttaggagaatctaagtttgattttaagtggaataattcttgaccatactttatttaccttct |
12379159 |
T |
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| Q |
237 |
atcc |
240 |
Q |
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|||| |
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| T |
12379160 |
atcc |
12379163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 42268851 - 42268899
Alignment:
| Q |
136 |
agttcaaatggttaattagttccacaaaagatgaattgtttaggagaat |
184 |
Q |
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| T |
42268851 |
agttcaagtggttaatgagttccacatatgatgaattgtttaagagaat |
42268899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 29157239 - 29157305
Alignment:
| Q |
130 |
caattaagttcaaatggttaattagttccacaaaagatgaattgtttaggagaatttaagtttgatt |
196 |
Q |
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| T |
29157239 |
caattgagttcaaatggttaataagttccataaataatgagttgtttaagagaactttagtttgatt |
29157305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 30481075 - 30481144
Alignment:
| Q |
146 |
gttaattagttccacaaaagatgaattgtttaggagaatttaagtttgattttaagtggaataatttttt |
215 |
Q |
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| T |
30481075 |
gttaatgagttctaccaaagacgaattgttcaagagaatcaaagtttgatttttagtggattaatttttt |
30481144 |
T |
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