View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17841_low_58 (Length: 237)
Name: NF17841_low_58
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17841_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 28738764 - 28738703
Alignment:
| Q |
160 |
gcacaaatttaaaccctaacaatggttccaccaccaccaaacccagaaacccaacaattcct |
221 |
Q |
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| T |
28738764 |
gcacaaattcaaaccctaacaatggttccaccaccaccaaacccagaaacccaacaattcct |
28738703 |
T |
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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 28738865 - 28738827
Alignment:
| Q |
55 |
aaagtatcacacgcgtaaccccagattgttaagtcaccg |
93 |
Q |
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| T |
28738865 |
aaagtatgacacgcgtaaccccagattgttaagtcaccg |
28738827 |
T |
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