View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17841_low_65 (Length: 218)

Name: NF17841_low_65
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17841_low_65
NF17841_low_65
[»] chr2 (11 HSPs)
chr2 (1-218)||(29490415-29490632)
chr2 (8-217)||(29488319-29488528)
chr2 (16-217)||(29502517-29502718)
chr2 (8-217)||(30256544-30256752)
chr2 (15-184)||(29507201-29507370)
chr2 (15-184)||(29518139-29518308)
chr2 (14-184)||(29549035-29549205)
chr2 (15-184)||(29511021-29511190)
chr2 (15-184)||(29541435-29541604)
chr2 (64-212)||(29505430-29505578)
chr2 (15-194)||(29535275-29535454)
[»] chr8 (1 HSPs)
chr8 (14-194)||(18874575-18874755)
[»] chr4 (1 HSPs)
chr4 (32-194)||(51266307-51266469)
[»] chr1 (2 HSPs)
chr1 (12-65)||(49721472-49721525)
chr1 (47-179)||(49721337-49721473)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 29490632 - 29490415
Alignment:
Q  1 caaatcaaagaagttacctttttgtcaatataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatggagctttatcattcc 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29490632 caaatcaaagaagttacctttttatcaatataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatggagctttatcattcc 29490533  T
Q  101 aaacctcatctatatactggacaataatagctgattcacaaacaggttttccattatgaataagaactggaattttcttatgaattggattcatctgaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29490532 aaacctcatctatatactggacaataatagctgattcacaaacaggttttccattatgaataagaactggaattttcttatgaattggattcatctgaag 29490433  T
Q  201 aagtataggacttttatc 218  Q
    ||||||||||||||||||    
T  29490432 aagtataggacttttatc 29490415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 29488528 - 29488319
Alignment:
Q  8 aagaagttacctttttgtcaatataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatggagctttatcattccaaacctc 107  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  29488528 aagaagttacctttttgtcactataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatgaagctttatcattccaaacttc 29488429  T
Q  108 atctatatactggacaataatagctgattcacaaacaggttttccattatgaataagaactggaattttcttatgaattggattcatctgaagaagtata 207  Q
    |||||| || || |||||||| || ||||||||||  | |||||||||||| |||||||||||||| || || |||||||| ||||| |||||||||| |    
T  29488428 atctatgtattgcacaataattgcagattcacaaatggattttccattatggataagaactggaatcttgttgtgaattgggttcatttgaagaagtaaa 29488329  T
Q  208 ggacttttat 217  Q
    ||||| ||||    
T  29488328 ggactcttat 29488319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 29502718 - 29502517
Alignment:
Q  16 acctttttgtcaatataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatggagctttatcattccaaacctcatctatat 115  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||| |||||||| |    
T  29502718 acctttttgtctatataatcaaaccaaaatctagcttgagctctctcatacggatcagagggcatgaatgaagctttatcattccaaacttcatctatgt 29502619  T
Q  116 actggacaataatagctgattcacaaacaggttttccattatgaataagaactggaattttcttatgaattggattcatctgaagaagtataggactttt 215  Q
    |||| ||||| || || ||||||||||  | |||||||||||| |||||||||||||| ||||| |||||||| ||||| | |||||||| |||||| ||    
T  29502618 actgcacaatgattgcagattcacaaatggattttccattatggataagaactggaatcttcttgtgaattgggttcatttcaagaagtaaaggactctt 29502519  T
Q  216 at 217  Q
    ||    
T  29502518 at 29502517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 30256544 - 30256752
Alignment:
Q  8 aagaagttacctttttgtcaatataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatggagctttatcattccaaacctc 107  Q
    ||||| |||||||||||||| |||| |||||||||||||||||||||||| |||||||||| | ||||| |||||||| |||||||||||||||||| ||    
T  30256544 aagaaattacctttttgtcactatactcaacccaaaatctagcttgagctttctcataagggtgagaagacatgaatgaagctttatcattccaaacttc 30256643  T
Q  108 atctatatactggacaataatagctgattcacaaacaggttttccattatgaataagaactggaattttcttatgaattggattcatctgaagaagtata 207  Q
    |||||| || || |||||||| || ||||||||||  | |||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||| |    
T  30256644 atctatgtattgcacaataattgcagattcacaaatggattttccattatggataagaactggaatcttcttgtgaattggattcat-tgaagaagtaaa 30256742  T
Q  208 ggacttttat 217  Q
    ||||| ||||    
T  30256743 ggactcttat 30256752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 29507201 - 29507370
Alignment:
Q  15 tacctttttgtcaatataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatggagctttatcattccaaacctcatctata 114  Q
    |||||| || |||||||||||| |||| ||||||||||| ||| ||| ||| ||||||||||||| ||| |||| ||||||||||||||||||||| |||    
T  29507201 taccttcttatcaatataatcagcccagaatctagcttgtgctttctgatatggatcagaaggcaagaaaggagatttatcattccaaacctcatcaata 29507300  T
Q  115 tactggacaataatagctgattcacaaacaggttttccattatgaataagaactggaattttcttatgaa 184  Q
    || || |||  |||    ||||||||||| ||||| ||||||||||| ||||| || |||||||| ||||    
T  29507301 tattgaacagcaattaaagattcacaaactggtttaccattatgaatgagaacagggattttcttgtgaa 29507370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 29518139 - 29518308
Alignment:
Q  15 tacctttttgtcaatataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatggagctttatcattccaaacctcatctata 114  Q
    |||||| || |||| ||||||| |||| ||||||||||| | ||||| |||||||||||||||||  || |||| ||| ||||||||||||||||| |||    
T  29518139 taccttcttatcaacataatcagcccagaatctagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacctcatcaata 29518238  T
Q  115 tactggacaataatagctgattcacaaacaggttttccattatgaataagaactggaattttcttatgaa 184  Q
    ||||| |||  |||    ||||||||||  | ||| ||||||||||||||||| || |||||||||||||    
T  29518239 tactgaacagcaattaaagattcacaaattgatttaccattatgaataagaacagggattttcttatgaa 29518308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 29549035 - 29549205
Alignment:
Q  14 ttacctttttgtcaatataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatggagctttatcattccaaacctcatctat 113  Q
    ||||||| || |||||||||||| ||||||||  |||||| | ||||| |||||||||||||||||  || |||| ||| ||||||||||| ||||| ||    
T  29549035 ttaccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaat 29549134  T
Q  114 atactggacaataatagctgattcacaaacaggttttccattatgaataagaactggaattttcttatgaa 184  Q
    ||| || |||  |||    ||||||||||  ||||||||||||||||||||||| || |||||||| ||||    
T  29549135 atattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaa 29549205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 29511021 - 29511190
Alignment:
Q  15 tacctttttgtcaatataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatggagctttatcattccaaacctcatctata 114  Q
    |||||| || |||| ||||||| |||| ||||||||||| | ||||| |||||||||||||||||  || |||| ||| ||||||||||| ||||| |||    
T  29511021 taccttcttatcaacataatcagcccagaatctagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaata 29511120  T
Q  115 tactggacaataatagctgattcacaaacaggttttccattatgaataagaactggaattttcttatgaa 184  Q
    || || |||  |||    ||||||||||  | ||| |||||||||||||||||||| |||||||||||||    
T  29511121 tattgaacagcaattaaagattcacaaattgatttaccattatgaataagaactgggattttcttatgaa 29511190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 29541435 - 29541604
Alignment:
Q  15 tacctttttgtcaatataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatggagctttatcattccaaacctcatctata 114  Q
    |||||| || |||| ||| ||| |||||||||||||||| |||||||  || |||||||||||||  || |||| | |||| |||||||||||||| |||    
T  29541435 taccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcatcaata 29541534  T
Q  115 tactggacaataatagctgattcacaaacaggttttccattatgaataagaactggaattttcttatgaa 184  Q
    ||||  ||||| | |  ||| ||||||| |||||| ||||| || || ||||| || |||||||| ||||    
T  29541535 tactcaacaattacaagtgactcacaaataggtttgccattgtggattagaaccgggattttcttgtgaa 29541604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 64 - 212
Target Start/End: Original strand, 29505430 - 29505578
Alignment:
Q  64 taaggatcagaaggcatgaatggagctttatcattccaaacctcatctatatactggacaataatagctgattcacaaacaggttttccattatgaataa 163  Q
    ||||||||||||||||  || ||||  | |||||||||||||||||| ||||| |  |||||| |   ||| |||||||  | ||| |||||||| || |    
T  29505430 taaggatcagaaggcaaaaaaggagaatgatcattccaaacctcatcaatatattcaacaatatttagtgactcacaaatggatttgccattatggatta 29505529  T
Q  164 gaactggaattttcttatgaattggattcatctgaagaagtataggact 212  Q
    |||||||||||||||| |||||||||||||| || || |||| ||||||    
T  29505530 gaactggaattttcttgtgaattggattcatttgtaggagtaaaggact 29505578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 29535275 - 29535454
Alignment:
Q  15 tacctttttgtcaatataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatggagctttatcattccaaacctcatctata 114  Q
    |||||| || |||| ||||||| |||| || |||||||| | ||||| |||||||||||||||||  || | || ||| ||||||||||||||||| |||    
T  29535275 taccttcttatcaacataatcagcccagaacctagcttgtgatctctgataaggatcagaaggcaacaaagaagatttctcattccaaacctcatcaata 29535374  T
Q  115 tactggacaataatagctgattcacaaacaggttttccattatgaataagaactggaattttcttatgaattggattcat 194  Q
    ||||| |||   ||    ||||||||||  | ||| ||||||||||| ||||| || |||||||| ||||| || |||||    
T  29535375 tactgaacagccattaaagattcacaaattgatttaccattatgaattagaacagggattttcttgtgaatagggttcat 29535454  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 18874575 - 18874755
Alignment:
Q  14 ttacctttttgtcaatataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatggagctttatcattccaaacctcatctat 113  Q
    ||||||||||||  | | ||||| |||||||||| ||||||||| ||| ||||||||| || || |  |||||  | ||||| |||||||||||||| ||    
T  18874575 ttacctttttgttgacaaaatcagcccaaaatcttgcttgagctttctgataaggatctgagggtagaaatgggaccttatccttccaaacctcatcaat 18874674  T
Q  114 atactggacaataatagctgattcacaaacaggttttccattatgaataagaactggaattttcttatgaattggattcat 194  Q
    ||| |  ||||||||    || ||| |||  |||||||| ||||| |||||||| ||||| ||||| |||||||| |||||    
T  18874675 atattcaacaataatgatggactcagaaattggttttcccttatggataagaacaggaatcttcttgtgaattgggttcat 18874755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 194
Target Start/End: Original strand, 51266307 - 51266469
Alignment:
Q  32 aatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatggagctttatcattccaaacctcatctatatactggacaataatagc 131  Q
    ||||| |||||||||||||||||||||||| ||  ||||| |  ||||  ||||||| || ||| ||||| |||||||| || || |  ||||||||       
T  51266307 aatcagcccaaaatctagcttgagctctctgatgtggatcggtgggcagcaatggagtttgatctttccagacctcatcaatgtattcaacaataatcaa 51266406  T
Q  132 tgattcacaaacaggttttccattatgaataagaactggaattttcttatgaattggattcat 194  Q
     ||||||||||  || || |||||||||||||| ||||||| ||| || |||| |||||||||    
T  51266407 ggattcacaaatgggcttcccattatgaataaggactggaacttttttgtgaactggattcat 51266469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 49721525 - 49721472
Alignment:
Q  12 agttacctttttgtcaatataatcaacccaaaatctagcttgagctctctcata 65  Q
    |||||| || |||| ||| |||||||||||||||||||||||||||||||||||    
T  49721525 agttactttattgtgaatgtaatcaacccaaaatctagcttgagctctctcata 49721472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 179
Target Start/End: Complemental strand, 49721473 - 49721337
Alignment:
Q  47 tagcttgagctctctcataaggatcagaaggcatgaatggagctttatcattccaaacctcat----ctatatactggacaataatagctgattcacaaa 142  Q
    |||||||||||||||||||||| | | | ||||||| ||||| |||||  ||||| |||||||    | |||||||  |||||||| || ||||||||||    
T  49721473 tagcttgagctctctcataagggtgatagggcatgattggagatttattgttccagacctcatccaaccatatactacacaataattgcagattcacaaa 49721374  T
Q  143 caggttttccattatgaataagaactggaattttctt 179  Q
      ||||| |||||||  || |||||||| || |||||    
T  49721373 tgggtttgccattattgatgagaactgggatcttctt 49721337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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