View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17841_low_8 (Length: 615)

Name: NF17841_low_8
Description: NF17841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17841_low_8
NF17841_low_8
[»] chr3 (8 HSPs)
chr3 (65-326)||(9334321-9334585)
chr3 (368-597)||(9334584-9334810)
chr3 (256-312)||(9329118-9329174)
chr3 (377-449)||(9329172-9329241)
chr3 (76-156)||(9328989-9329068)
chr3 (221-300)||(9580227-9580306)
chr3 (452-547)||(9394298-9394393)
chr3 (463-538)||(38413865-38413941)
[»] chr7 (2 HSPs)
chr7 (243-370)||(451271-451398)
chr7 (280-325)||(3680059-3680104)
[»] scaffold0400 (1 HSPs)
scaffold0400 (280-355)||(15383-15458)
[»] scaffold0365 (1 HSPs)
scaffold0365 (280-355)||(16026-16101)
[»] chr1 (2 HSPs)
chr1 (280-355)||(14493984-14494059)
chr1 (259-366)||(4432648-4432755)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 65 - 326
Target Start/End: Original strand, 9334321 - 9334585
Alignment:
Q  65 ctattttcaatatatcaaacatgagta---gtatactgagaattgaaacaaaatacaagtcttcttggaaatataacacttttgccagtttcaccgtcat 161  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9334321 ctattttcaatatatcaaacatgagtagtagtatactgagaattgaaacaaaatacaagtcttcttggaaatataacaattttgccagtttcaccgtcat 9334420  T
Q  162 gctgtcaggatataataataagagattaaatttccatatcgccaagttttgtgcgtaaacccaatggtgtgtctcatatcatctttctttccctcgcccc 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9334421 gctgtcaggatataataataagagattaaatttccatatcgccaagttttgtgcgtaaacccaatggtgtgtctcatatcatctttctttccctcgcccc 9334520  T
Q  262 tgtataaagtgacaaaagtttctgttaagaactaaatgagaagatccaaatcttaataaatcata 326  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9334521 tgtataaagtgacaaaagtttctgttaagaactaaatgagaatatccaaatcttaataaatcata 9334585  T

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Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 368 - 597
Target Start/End: Original strand, 9334584 - 9334810
Alignment:
Q  368 tatatatctaatagtgagaattacataccaagtaataagtagtatatgatttatgcacaatgaagaaaacttcaaaatagatgtaataaaggatgaacta 467  Q
    ||||||||||||||||||||||||| ||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9334584 tatatatctaatagtgagaattacacaccaagtaatacgta---tatgatttatgcacaatgaagaaaacttcaaaatagatgtaataaaggatgaacta 9334680  T
Q  468 tcaaaacctaatcaaagtaaacgacaaacaaagaggacagataagtcatagataagttactcagaactgcacttttcacactgtcctttctaataaggaa 567  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9334681 tcaaaacctaatcaaagtaaacgacaaacaaagaggacagataagtcatagataagttactcagaactgcacttttcacaatgtcctttctaataaggaa 9334780  T
Q  568 aacaaaaaacaagagtttgctatcatagtt 597  Q
    |||||||||||| |||||||||||||||||    
T  9334781 aacaaaaaacaaaagtttgctatcatagtt 9334810  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 9329118 - 9329174
Alignment:
Q  256 cgcccctgtataaagtgacaaaagtttctgttaagaactaaatgagaagatccaaat 312  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9329118 cgcccctgtataaagtggcaaaagtttctgttaagaactaaatgagaagatccaaat 9329174  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 377 - 449
Target Start/End: Original strand, 9329172 - 9329241
Alignment:
Q  377 aatagtgagaattacataccaagtaataagtagtatatgatttatgcacaatgaagaaaacttcaaaatagat 449  Q
    |||||||||||||||| ||||| |||||||||   ||||||||||||||||||||||||||||||||||||||    
T  9329172 aatagtgagaattacacaccaaataataagta---tatgatttatgcacaatgaagaaaacttcaaaatagat 9329241  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 9328989 - 9329068
Alignment:
Q  76 atatcaaacatgagtagtatactgagaattgaaacaaaat-acaagtcttcttggaaatataacacttttgccagtttcacc 156  Q
    ||||||||||||||||||||  | |||||||||||||||| ||||||||| ||||||| |||| |||||||||| |||||||    
T  9328989 atatcaaacatgagtagtat--tcagaattgaaacaaaataacaagtcttgttggaaaaataaaacttttgccaatttcacc 9329068  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 9580306 - 9580227
Alignment:
Q  221 cccaatggtgtgtctcatatcatctttctttccctcgcccctgtataaagtgacaaaagtttctgttaagaactaaatga 300  Q
    |||||||  ||||||||  || ||||||||| | |||| |||||||||||||||||||||||||||||| ||||| ||||    
T  9580306 cccaatgtcgtgtctcacgtcctctttcttttcgtcgctcctgtataaagtgacaaaagtttctgttaaaaactatatga 9580227  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 452 - 547
Target Start/End: Original strand, 9394298 - 9394393
Alignment:
Q  452 aataaaggatgaactatcaaaacctaatcaaagtaaacgacaaacaaagaggacagat-aagtcatagataagttactcagaactgcacttttcaca 547  Q
    ||||||||||||| | |||||||| ||||  ||||||| | ||||||||| ||||||| ||  |||||| |||||||||||||| ||| ||||||||    
T  9394298 aataaaggatgaagtttcaaaaccgaatcttagtaaacaagaaacaaagaagacagatcaaaccataga-aagttactcagaacagcatttttcaca 9394393  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 463 - 538
Target Start/End: Original strand, 38413865 - 38413941
Alignment:
Q  463 aactatcaaaacctaatcaaagtaaacgacaaacaaagaggacag-ataagtcatagataagttactcagaactgca 538  Q
    ||||||||||||  |||| |||||||| | ||||||||||||| | ||  ||||||||||||||| ||| |||||||    
T  38413865 aactatcaaaactcaatctaagtaaacaagaaacaaagaggacggaatcggtcatagataagttattcaaaactgca 38413941  T

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Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 243 - 370
Target Start/End: Complemental strand, 451398 - 451271
Alignment:
Q  243 tctttctttccctcgcccctgtataaagtgacaaaagtttctgttaagaactaaatgagaagatccaaatcttaataaatcataacagagaaaatttata 342  Q
    |||||||||| || |  ||| ||||||| |||||||  || ||| | ||||||||||||||||| |||||| |||||||| ||  ||  |||||||||||    
T  451398 tctttctttctctaggtcctatataaagagacaaaaaattgtgtcaggaactaaatgagaagattcaaatcctaataaataatgtcatggaaaatttata 451299  T
Q  343 aaagtaaaatgataaattcattttctat 370  Q
    |||||||| ||||||||| |||||||||    
T  451298 aaagtaaattgataaattgattttctat 451271  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 3680104 - 3680059
Alignment:
Q  280 tttctgttaagaactaaatgagaagatccaaatcttaataaatcat 325  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  3680104 tttctgttaggaactaaatgagaagatccaaatcttagtaaatcat 3680059  T

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Target: scaffold0400 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 355
Target Start/End: Original strand, 15383 - 15458
Alignment:
Q  280 tttctgttaagaactaaatgagaagatccaaatcttaataaatcataacagagaaaatttataaaagtaaaatgat 355  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||   |   |||||||||||||||||| ||||    
T  15383 tttctgttaagaactaaatgagaagatccaaatcctaataaataattttatgtaaaatttataaaagtaaattgat 15458  T

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Target: scaffold0365 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 355
Target Start/End: Original strand, 16026 - 16101
Alignment:
Q  280 tttctgttaagaactaaatgagaagatccaaatcttaataaatcataacagagaaaatttataaaagtaaaatgat 355  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||   |   |||||||||||||||||| ||||    
T  16026 tttctgttaagaactaaatgagaagatccaaatcctaataaataattttatgtaaaatttataaaagtaaattgat 16101  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 14494059 - 14493984
Alignment:
Q  280 tttctgttaagaactaaatgagaagatccaaatcttaataaatcataacagagaaaatttataaaagtaaaatgat 355  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||   |   |||||||||||||||||| ||||    
T  14494059 tttctgttaagaactaaatgagaagatccaaatcctaataaataattttatgtaaaatttataaaagtaaattgat 14493984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 366
Target Start/End: Original strand, 4432648 - 4432755
Alignment:
Q  259 ccctgtataaagtgacaaaagtttctgttaagaactaaatgagaagatccaaatcttaataaatcataacagag-aaaatttataaaagtaaaatgataa 357  Q
    ||||||| ||||| |||||   || ||||| |||||||||||||||||||||||| |||||||| ||| | ||| |||||||||||  ||||| ||||||    
T  4432648 ccctgtaaaaagtaacaaagcattttgttaggaactaaatgagaagatccaaatcctaataaataatatc-gagcaaaatttataaccgtaaattgataa 4432746  T
Q  358 attcatttt 366  Q
    ||| |||||    
T  4432747 attgatttt 4432755  T

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