View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17842_high_10 (Length: 363)
Name: NF17842_high_10
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17842_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 31201879 - 31202212
Alignment:
| Q |
19 |
aagctatctccaaaaactccgcctcggttattgaagctacacttccaaaactcacataaaccacagattttggtttgtgtttgtttaaccatgaaatgca |
118 |
Q |
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| T |
31201879 |
aagctatctccaaaaactccgcctcggttattgaagctacacttccaaaactcacataaaccacagattttggtttgtgtttgtttaaccatgaaatgca |
31201978 |
T |
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| Q |
119 |
attttggtcttgtggtattaagctgctagaagaagatgtattgttagtagggaaatacttgtgaaaaggtcctattgggaacattggaattgaaaattgt |
218 |
Q |
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| T |
31201979 |
attttggtcttgtggtattaagctgctagaagaagatgtattgttagtagggaaatacttgtgaaaaggtcctattgggaacattggaattgaaaattgt |
31202078 |
T |
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| Q |
219 |
tggcttag---tgatagtggtaatgattccaagtcttcaaaggtgttccaaatcactcctaatgaggctttggttttgttgacaaaattgcatattaact |
315 |
Q |
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| T |
31202079 |
tggcttagtgttgatagtggtaatgattccaagtcttcaaaggtgttccaaatcactcctaatgaggctttggttttgttgacaaaattgcatattaact |
31202178 |
T |
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| Q |
316 |
cgtaatatttctctggttcctttgtgttgatcat |
349 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
31202179 |
cgtaatatttctctggttcctttgtgttgatcat |
31202212 |
T |
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